Protein Info for QEN71_RS12720 in Paraburkholderia sabiae LMG 24235

Annotation: YncE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF21783: YNCE" amino acids 93 to 347 (255 residues), 31.2 bits, see alignment E=2.2e-11 PF10282: Lactonase" amino acids 127 to 330 (204 residues), 24.8 bits, see alignment E=1.8e-09 TIGR02276: 40-residue YVTN family beta-propeller repeat" amino acids 310 to 349 (40 residues), 38.2 bits, see alignment 5.5e-14

Best Hits

KEGG orthology group: None (inferred from 84% identity to bph:Bphy_6260)

Predicted SEED Role

"Surface antigen gene"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>QEN71_RS12720 YncE family protein (Paraburkholderia sabiae LMG 24235)
MKRPSIIAVAFSASALIAAQFAWAGQAPGSQSDPDIPVSHHDRVYAAEQFSNTVSVIDPA
DNRLLGLIRLGDPSPGNFSPLYKGQLLVHGMGFSPDHRTIAVVSIGSNSVSFIDTQTNAV
RHVTYVGRSPHEAFFTPDGKEVWVTVRGENYVAVLDGKTYEEKSRITVPSGPGMQIFSPD
GKYGYVCSSFNPETEVVSVADHKIVGTVRQASPFCPDLAATPDGKQVWFTLKDTGKVQVF
DARPPFAPITTLDTGPITNHVNIVHNDKGTFAYVSVGGLNVVKVFRTDDFSQVATIPVGN
LPHGIWPSGDGSRIYVGLENADAMTAIDTSTNTVIATVPIGQAPQAVTYVPDAVPEGDGT
LNLQTLGLAGQSVHIVLVPIGSGKANNASSTPTTVALFDQGLVQVLQAAVTGLQPKQPYV
LALADNANGKGDLQVLANFMSNPAGSAIVNALGQIRQLVTPGTGNAGKAGERRRYLVVAP
QGADKPGAPVQVQSP