Protein Info for QEN71_RS12630 in Paraburkholderia sabiae LMG 24235

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 PF00126: HTH_1" amino acids 16 to 74 (59 residues), 54.3 bits, see alignment E=1e-18 PF03466: LysR_substrate" amino acids 101 to 306 (206 residues), 123.4 bits, see alignment E=8.6e-40

Best Hits

KEGG orthology group: None (inferred from 96% identity to bph:Bphy_3466)

Predicted SEED Role

"FIG000557: hypothetical protein co-occurring with RecR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (319 amino acids)

>QEN71_RS12630 LysR family transcriptional regulator (Paraburkholderia sabiae LMG 24235)
MSQNAATVALVNRLKFKHLALLVALDDARNVHQAADAINVAQPSASRMLGDIEEALGFLL
FERNARGMQPTPLGVVTLAYARRALAELTRFAEDLDAKRKGGHGQLTVGAIMGAAPDLLA
MAVAALKTERPLLHVCILGETSDQVVQLLHRREVDLALGRLTNPLQHNDFSFEPLARETL
VLVVRAVHPLAERASVSLRELMDWPWVAQPVSSPARVLFEEELARAGLGTPANLTECASI
FATLQLLENYDAVAMLPESVVRDHVRGKLLVALPVEIGKSLAGFGILTRKEEALAEPAQR
FVELLRVHSARLSREDALA