Protein Info for QEN71_RS12610 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 38 to 56 (19 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 92 to 112 (21 residues), see Phobius details amino acids 117 to 141 (25 residues), see Phobius details amino acids 147 to 163 (17 residues), see Phobius details amino acids 185 to 208 (24 residues), see Phobius details amino acids 238 to 259 (22 residues), see Phobius details amino acids 271 to 291 (21 residues), see Phobius details amino acids 293 to 293 (1 residues), see Phobius details amino acids 298 to 319 (22 residues), see Phobius details amino acids 325 to 343 (19 residues), see Phobius details PF02653: BPD_transp_2" amino acids 66 to 331 (266 residues), 123.9 bits, see alignment E=3.5e-40

Best Hits

KEGG orthology group: None (inferred from 96% identity to bph:Bphy_3462)

Predicted SEED Role

"Predicted L-rhamnose ABC transporter, transmembrane component 2" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (353 amino acids)

>QEN71_RS12610 ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MIRHSTHSHAASIEHTPMQRTRSGPGGIVGTLAKSRETTLFVVLILLILGTSLARPQFLN
LQNLRDVLLNVSIISLLTAGMTVVILMRHIDLSVGSTVGISAYAVGSLYVAFPHMPVLVA
LVAGVAIGLIAGGINALLIAVGRVPSLVATLSTLYIFRGADYAWVHGGQINATSLPEAYS
RLATGTLLGIPTLALIAAVVLLALSFYLKHFRAGREHYAIGSNPEAARLAGVNVERRVMS
GFLLSGAIAGFAGALWLARFGTVDASTAKGIELQVVAAAVVGSVAITGGVGTILGATLGA
LVLGVISIALVVLHVSPFWEQAIEGALIVAAIAADTLLARSVAKRMMRKRDHG