Protein Info for QEN71_RS12570 in Paraburkholderia sabiae LMG 24235

Annotation: choline ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 43 to 61 (19 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 135 to 162 (28 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 246 to 263 (18 residues), see Phobius details TIGR03416: choline ABC transporter, permease protein" amino acids 4 to 267 (264 residues), 372.3 bits, see alignment E=7e-116 PF00528: BPD_transp_1" amino acids 106 to 268 (163 residues), 94.9 bits, see alignment E=2.7e-31

Best Hits

Swiss-Prot: 49% identical to OPUAB_BACSU: Glycine betaine transport system permease protein OpuAB (opuAB) from Bacillus subtilis (strain 168)

KEGG orthology group: K02001, glycine betaine/proline transport system permease protein (inferred from 94% identity to bph:Bphy_3449)

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>QEN71_RS12570 choline ABC transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MSEIIPLGRWVDQSVHYLLDHDASTFDSIGKAIESFAAMIEHGLQAIPMWALMAFFILIG
LWRVGWRFGIFATASLLLIWATGFWDQTVVTLGLTLSSTIISLLFGIPLGIWAAKNKHVQ
MIVRPILDLMQTMPAFVYLIPAAMLFGLGRVPGILSTVIFAMPPAVRLTSLGIKHVNREI
VEAGQAFGCTSTQLLFKVQIPNALPSIMQGVNQTIMMALSMVIIASMVGAGGLGNDVLAS
IQRLDIGLGFESGLSVVLLAIILDRITESFGRSPGAATAPRFAGLRNVMRVRREQPVVAQ
S