Protein Info for QEN71_RS11550 in Paraburkholderia sabiae LMG 24235

Annotation: HPP family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 49 to 69 (21 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 98 to 117 (20 residues), see Phobius details amino acids 135 to 158 (24 residues), see Phobius details PF04982: HPP" amino acids 50 to 166 (117 residues), 111.7 bits, see alignment E=1.3e-36

Best Hits

KEGG orthology group: None (inferred from 52% identity to pmy:Pmen_2162)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>QEN71_RS11550 HPP family protein (Paraburkholderia sabiae LMG 24235)
MTIPSAAPAGDSGASTWRAQAGSILLAGLGGFIALALVGMLATRTAQPWILGSFGATCVL
LFGFPASPFSQPRNIVGGHVLTTLTGLLCLHLFGPGYVPMAAAAACALMLMMITRTVHPP
AGSNPVIIFAAQPGWSFLVLPTMSGAVALVAIGWVYWTTIKRGSWPLRWN