Protein Info for QEN71_RS11520 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 52 to 72 (21 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 144 to 164 (21 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 228 to 247 (20 residues), see Phobius details amino acids 266 to 284 (19 residues), see Phobius details amino acids 296 to 313 (18 residues), see Phobius details amino acids 319 to 342 (24 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 382 to 404 (23 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 323 (300 residues), 144 bits, see alignment E=1.1e-45 PF00083: Sugar_tr" amino acids 47 to 417 (371 residues), 86.5 bits, see alignment E=3.7e-28

Best Hits

KEGG orthology group: None (inferred from 88% identity to bph:Bphy_5191)

Predicted SEED Role

"Sialic acid transporter (permease) NanT" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>QEN71_RS11520 MFS transporter (Paraburkholderia sabiae LMG 24235)
MFKWFSEISGNERRTFWACFGGWALDSLDVQMFSLVIPAIIAEWSISRTQAGLVSGATLV
ASALGGWIAGMLSDRFGRVRTLQWTVAFFSVFTFLCAFTQNYPQFLVLKTLQGFGFGGEW
AAGAVLMAETIRDRHRGKAMGSVQSAWAVGWGAAVLLYLLMFSLLPGHTAWRVMFGIGIV
PALLILYVRRGVQEPTKSAHTTRAASAPHDETASGLIVGIFAPKMLRMTLIGALLGVGAH
GGYYALMTWLPTFLKTERHLSVLSTGGYLAVVIIAFFCGCLVSAQLLDRIGRRNTILIFA
ICCVVTVIAYLFLPLGNTAMLFFGFPLGFFAAGIPASMGALFNELYPSGMRGTGVGFCYN
FGRVVSAGFPVLVGHMSTNMSLGTAIGIDAALAYAIVVLSVLMLPETRGRALGEAARDTN
VRHPLSPAQRH