Protein Info for QEN71_RS11315 in Paraburkholderia sabiae LMG 24235

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 95 to 117 (23 residues), see Phobius details PF00126: HTH_1" amino acids 7 to 66 (60 residues), 86.3 bits, see alignment E=1.1e-28 PF03466: LysR_substrate" amino acids 94 to 294 (201 residues), 172.1 bits, see alignment E=1.1e-54

Best Hits

KEGG orthology group: None (inferred from 94% identity to bge:BC1002_1257)

Predicted SEED Role

"LysR family transcriptional regulator YbhD" in subsystem DNA-binding regulatory proteins, strays

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>QEN71_RS11315 LysR family transcriptional regulator (Paraburkholderia sabiae LMG 24235)
MGINFDLNDLQAFRAVVELGSFRKAAEAVSISQPALSRRIDKLEEALGVRLFERTTRSVT
LTTVGRVFAPSAEQLLDDLDVALLGIRDVSSSRLGHVTIACVPSVAYYFLPSVIASYHRR
FPRIRVKLLDSSANEVLGAVISGEADFGVSFMGSQESEIEFKVLLQERFVAACRRDHPLA
RKKRVTWDELYEHDYVSVDKTSGNRLLLDQALAAVAPHAPSVCETRHVTTMLGLVEAGLG
VAAVPSMAMPGHDHPILTSVPLVEPVVKRRVGIVRRRGRPLTPAAQEFHRTIIETKRAGV
GSSDATGDNVTATTKARRKTAS