Protein Info for QEN71_RS11200 in Paraburkholderia sabiae LMG 24235

Annotation: cytosine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 transmembrane" amino acids 33 to 54 (22 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 100 to 126 (27 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 168 to 189 (22 residues), see Phobius details amino acids 201 to 222 (22 residues), see Phobius details amino acids 240 to 264 (25 residues), see Phobius details amino acids 283 to 309 (27 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 355 to 377 (23 residues), see Phobius details amino acids 402 to 423 (22 residues), see Phobius details amino acids 435 to 452 (18 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 19 to 440 (422 residues), 172.4 bits, see alignment E=7.6e-55

Best Hits

KEGG orthology group: None (inferred from 91% identity to bpy:Bphyt_2364)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (471 amino acids)

>QEN71_RS11200 cytosine permease (Paraburkholderia sabiae LMG 24235)
MATTERKASQLIEKHTIGYVPPEDRHGKVRDLFTLWFGGNIAPLPIVTGALGVQLFHLNL
LWGIVAIVVGQAVGGVLMALHSAQGPQMGIPQMIQSRAQFGSWGALLVTVIAGVMYVGFF
ASNIVLAGKSLHGIESSVSVPTGIVVGALGSGLIGIIGYRFIHILNRIGTWVLGIGIFIG
FGYILTHVSTADFLTRGGFNVAGWLATVSLSALWQIAFAPYVSDYSRYLPENVSVASTFW
ATYLGCTIGSTLAFVFGAVAVLAVPPGVDAMDAVKQATGPLGLPMLVLFLLSVISHNALN
LYGAVLASITSVQTFAYRWIPTAKTRAVFSFVILAACCYAAIGASTNFVGNLVDLVLALL
VVLVPWTAINLIDFYVIHKGKYDIESIFQADGGLYGRFNPQALIAYAVGIAVQIPFMNTP
MYAGPVPGYLDGADLSWVIGLVLTSPLYYWLATRDSTYRRRLNSGMRATVR