Protein Info for QEN71_RS09780 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF00005: ABC_tran" amino acids 24 to 165 (142 residues), 115.7 bits, see alignment E=5.2e-37 PF17912: OB_MalK" amino acids 239 to 292 (54 residues), 41.3 bits, see alignment 4.6e-14 PF08402: TOBE_2" amino acids 285 to 355 (71 residues), 36.9 bits, see alignment E=6.4e-13

Best Hits

Swiss-Prot: 53% identical to AGLK_RHIME: Alpha-glucoside transport ATP-binding protein AglK (aglK) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 96% identity to bph:Bphy_5438)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>QEN71_RS09780 ABC transporter ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MATNMANVAVRDLKIQLGANTVIDALDLDVRAGEFVVLLGPSGCGKSTLLHSIAGLIDVT
EGSIEIGGEDMTWADPKDRRIALVFQSYALYPTMSVERNLSFALRISGTPKAEIERRVAR
ASDMLQLGPLLKRKPAQLSGGQRQRVAIGRAIVREADVFLFDEPLSNLDAKLRTELRREL
KQLHQQLGATMIYVTHDQVEAMTLATRMAVMKNGVIQQFGTPAEVYARPANLFVATFLGS
PAMNLLNGTLLAQDDGVRFTGAKLDLDVSSYPFAAPPENGKPCVLGVRPEDVRVRIGADS
NQRGQVSLIEPMGNHRVIWLDYHGTQIASIDQEKTPVAVGDSVAFAIDGAHVSLFDEAGG
ARL