Protein Info for QEN71_RS09595 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 26 to 41 (16 residues), see Phobius details amino acids 55 to 79 (25 residues), see Phobius details amino acids 89 to 112 (24 residues), see Phobius details amino acids 116 to 143 (28 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 239 to 261 (23 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details amino acids 331 to 356 (26 residues), see Phobius details amino acids 368 to 393 (26 residues), see Phobius details amino acids 400 to 419 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 19 to 214 (196 residues), 65.1 bits, see alignment E=6e-22 amino acids 228 to 412 (185 residues), 35.5 bits, see alignment E=5.6e-13 PF07690: MFS_1" amino acids 22 to 284 (263 residues), 54.3 bits, see alignment E=1.1e-18 amino acids 251 to 422 (172 residues), 58.7 bits, see alignment E=4.9e-20

Best Hits

KEGG orthology group: None (inferred from 96% identity to bph:Bphy_5468)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>QEN71_RS09595 MFS transporter (Paraburkholderia sabiae LMG 24235)
MSTLALEKAGLSKTQVIAATTLGTALEFYDFTIYSFFAIQIGQLFFPSASPVNQFLLSIG
VFGVGFVVRPLGGIVIGAYADRAGRKKAMVLTIMLMALSCALIACAPTYAMVGMAAPFIV
LTARLIQGFAAGGEFGPGTTLLVEYASNSTRAFFASWNFAATALGLALGAAVATLVNVTL
PKDAVLAWGWRIPFVLGIVAAPVGMLIRRRLEETLSDASSAGTHRRGALKAALTTHLKLT
ILGTFAELGGSVSVYITAFFLPSHAVRTLHLSSTASVASGVISSLVLFVAAPIAGKLADR
FSRKRVLVTSRVILLLTVYPAFAWLSAQPSAFMLCAVSAFLAVFVAGQIVPVLVMIPELF
PKHVRATGIALTYVVSASFFGGFSPFVASWLVALTGNPLAPAWYVAAACAVSLVPVIWLR
DRTGEALN