Protein Info for QEN71_RS09465 in Paraburkholderia sabiae LMG 24235

Annotation: RHS repeat-associated core domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1570 PF20148: DUF6531" amino acids 365 to 436 (72 residues), 57.4 bits, see alignment 2.2e-19 TIGR01643: YD repeat (two copies)" amino acids 654 to 692 (39 residues), 29.4 bits, see alignment (E = 7.8e-11) amino acids 695 to 735 (41 residues), 28 bits, see alignment (E = 2.2e-10) amino acids 716 to 755 (40 residues), 32.8 bits, see alignment (E = 6.5e-12) amino acids 758 to 797 (40 residues), 43.9 bits, see alignment (E = 2.1e-15) amino acids 820 to 860 (41 residues), 31.2 bits, see alignment (E = 2.2e-11) amino acids 841 to 870 (30 residues), 21.3 bits, see alignment (E = 2.9e-08) amino acids 1083 to 1121 (39 residues), 21.4 bits, see alignment (E = 2.8e-08) amino acids 1168 to 1197 (30 residues), 22.1 bits, see alignment (E = 1.6e-08) PF05593: RHS_repeat" amino acids 654 to 690 (37 residues), 33.5 bits, see alignment (E = 6.3e-12) amino acids 674 to 709 (36 residues), 37.8 bits, see alignment (E = 2.9e-13) amino acids 716 to 752 (37 residues), 41.4 bits, see alignment (E = 2.2e-14) amino acids 758 to 794 (37 residues), 52.5 bits, see alignment (E = 6.9e-18) amino acids 779 to 814 (36 residues), 36.2 bits, see alignment (E = 9.2e-13) amino acids 820 to 847 (28 residues), 28 bits, see alignment (E = 3.4e-10) amino acids 1083 to 1113 (31 residues), 24.2 bits, see alignment (E = 5.5e-09) PF03527: RHS" amino acids 1302 to 1334 (33 residues), 55.6 bits, see alignment (E = 5.4e-19) TIGR03696: RHS repeat-associated core domain" amino acids 1327 to 1410 (84 residues), 89 bits, see alignment 2.3e-29

Best Hits

KEGG orthology group: None (inferred from 55% identity to bur:Bcep18194_A3550)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1570 amino acids)

>QEN71_RS09465 RHS repeat-associated core domain-containing protein (Paraburkholderia sabiae LMG 24235)
MTSQSAIATEVAIAPLVTFTKEDVGSALEEFDAWLRSVSDGYITLERVKDLANAVPVVSN
ILSAIDVVMDIKRLIEAEVRDLFDYLNLGIDLIGVIPIPPVMGEFRMGARPLLKLAREEL
IRSGKAVAEAGGQMIADTIISVLVAHISAKFAGEIDSFVKEIKARVAQLLDDCANHAQKL
LEGLAQIFEGAASGRLFDTSGNYRAADKHLHEAGEAFAAHDAGKIADSVWSYLKDGTKVF
VKDAANLATRAVNEISPSTNQQLMHMATQARHAIPMVTQKIKGLNSSDVGGMLWLIDALL
QAVAKWREKHGGKGAQTVGIKEAGKVEAELKKTEGELETIGKQAKAKHPGPNCKSCSAGR
SAGSIGYALGDERFEHEDFMLPGAMPIIWQRTYRSFLDAYDHGELGARWITPYTTRFDIH
AAKLVYHDPSGRSIDYPLLKAGDTHDDLGEGVTLAQLDEQWLTVTRGHELMEAYEKHGDA
FRLGFIKDRSGNQITFDYTKDHHLSRLIAAQGVIAFSHDSAGRIVEAAHYDNEGERVGTL
ATYTYDREGDLVAAADRYGNRREYAYAHHLVTRYTDRTGRGMNLEWDGTGPKARCVHEYA
DDGTNETRLAWHPEIRLVYVTDGLGSMTRHYYDIDGYTYRIVHPDAREEWFYRDANHHVT
QRIYPDGTVARFAYDARGNLVEQVRPDGSVVRMEYDAKDQMTTIVDPQGFRWEREYDDKG
NVVAQIDPLGRETKYTYNGAGLPTQITDAKGGAKTLAYDANGQLTSYTDCSGKTTQWTYD
AHGRLLEATDAAGHSTVYRYGANGQLSAVVKPSGIELMEHDGEGRLTEHADPSRATTRYG
YDAAGRIAYRTDALGQTLAYRYDRLGRLSTLEDANHATYRLFYDPVSRLTAEIGFDGKET
RYEYDAASSKLIAIDEAGAVTHLEYDRAGRLARRVAGGDEESFAYDAGGRLAEARNAHCR
VQHFYDAVGNLIREHHAYELFGAKRSYVWRHEYDEIDARVRTQRPDGHTVDWLTYGAGHV
HGMMLDGRELVQFERDDLHREIQRNFASQLEQRTKYDAAGRIVEQRLARASAPGHVAERR
YGYDPAGQLTHIDDSRQGPTTYRYDPVGRLLEALSPMAKEQFAFDPASNIGYPHAGTTTS
SASSTLSTQIPKTLGNLLQDYAGTHFDYDARGNLIGRRSPGSAQRYEWDGFNRLIGARVD
EPAASREARYFYDPFGRRIARQVDRVQTIFGWDGDTLAFESSGAHSIHFVYEAGSFTPLA
QYAGTAVEGIETPQWKSTDRYAPEDDPLMQPPAANAPASALFYHCDQIGTPLMMTDERGD
IVWEARYKAWGETIAVDARASHITHVPPQNPIRFQGQQFDDETGLAYNRYRYYDPRTGRY
ISQEPIGLLGNTNPYQYAPNPTDWIDPRGLKGKKAQASGQACCSPNPCEGKDPAKEARGW
QGTAPYKGVDSYQNTVLKRGTVLYSLYPGGAPGYAVTIGSLRQAAGSSEKFHDLVQVTPG
VDGDGNPRARRTQVRAYFVTKDICVAKGRAMANPTFDGVKDDHVYPGGGLQYFIPPSEKV
HLTPGIIRNI