Protein Info for QEN71_RS08580 in Paraburkholderia sabiae LMG 24235

Annotation: cellulose synthase subunit BcsC-related outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1564 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13432: TPR_16" amino acids 297 to 348 (52 residues), 16.6 bits, see alignment (E = 5.7e-06) amino acids 376 to 434 (59 residues), 30.9 bits, see alignment (E = 1.9e-10) amino acids 405 to 461 (57 residues), 26.7 bits, see alignment (E = 4e-09) amino acids 481 to 543 (63 residues), 22.5 bits, see alignment (E = 8e-08) amino acids 773 to 833 (61 residues), 18.5 bits, see alignment (E = 1.4e-06) PF14559: TPR_19" amino acids 298 to 361 (64 residues), 32.2 bits, see alignment (E = 6.5e-11) amino acids 379 to 429 (51 residues), 25.5 bits, see alignment (E = 8.1e-09) amino acids 410 to 466 (57 residues), 31.1 bits, see alignment (E = 1.5e-10) amino acids 488 to 552 (65 residues), 40.6 bits, see alignment (E = 1.6e-13) PF13181: TPR_8" amino acids 735 to 767 (33 residues), 11.9 bits, see alignment (E = 0.00014) PF13176: TPR_7" amino acids 737 to 767 (31 residues), 16.6 bits, see alignment (E = 4e-06) amino acids 804 to 829 (26 residues), 19.5 bits, see alignment (E = 4.8e-07) PF05420: BCSC_C" amino acids 1200 to 1541 (342 residues), 403.6 bits, see alignment E=4.5e-124

Best Hits

KEGG orthology group: None (inferred from 86% identity to bph:Bphy_3253)

Predicted SEED Role

"Cellulose synthase operon protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1564 amino acids)

>QEN71_RS08580 cellulose synthase subunit BcsC-related outer membrane protein (Paraburkholderia sabiae LMG 24235)
MPIRQRALVIGVALTLGAGAAASAFAQAQTQAQPNDPMNVLIDQGKYWQAHKRGDLAEQA
WLKVLRIDPKQPDALYGMGIVMSDRKDGAGAQQYLARLRQAAPNYPNIDELARRLGQSSP
TDQAVNDARRLAQSGQQASAAQAYRQALGAKPNNPQLALEYYQALGSSPQGWEEARRGLE
QLAREHRDDPHFALAYAQHLTYREANRREGIEQLAQLSKDSIVGAQAKAAWRQALLWLGV
RASDAPLFQAYLSVAPDDAAVKARADSIAEQDRRASERAQQNAGSDARGRAVAEGFAALD
RGDLVTAKARFSSVLASAPNDGDALGGMGVALLKQEQFAQAREYLLRASQQGGAARWREA
LNSATYWMYTSEGLGEQSNGNLTQAKASFEKAIAVSPGDVTAQTALGDLLMQGGDPRGAE
AAFRMALRRQADNPDAIRGLVGALAAQGRGDEALSFANQLTDEQRKKVGGADRLRGEAQA
AQARAAEARGDLGNARSLFEDALLSNPDDPWLRLDLARIYAKQGAYANAKSIMDGLIALH
PDMPDAYYASALLAADMQDWRYGLSQLEHIPANKRTDQMAMLQHRLWVHQQCDEAVALAK
SGRVAQARALLQNAEPVAGTNAELIGAIASAYVNTGDTARALMMVRSAVARSPNDAGLLL
TDAGILLNAGQDVELGEVMRRLASMQLTGQQRSDFEKINVAIVVRRTDALRQANDLASAF
DVLSPWLAARPNDPDILAALARLYTANNDNANALATYRLALAQNPNDLGLLLNAAGAATQ
IRKFDFAESTLKQALRIAPNNADALAAMGRMYRAQGRNSLAAQYFQRALIAQNAPLARPG
AQTAGANGQPVPSGWDVPLRSRGPIPLPGTNPFANRTSADASNSVPFPAQNTQPYPMPAM
PAYTPPTQPATAPYAPYVAPQPQMQPAMQINSLGVLAPQAKSDERDTSPDADGYGPDQYG
SSQSGGGLAPGQAYPAQAYAQPQPYQQPYQQPYAQQMPAHPYPQPVYAQPNDVSTPWPMS
PQAQAAAQAQATQQPMNAQPASKKRTSKNARTSNNNAAYAQQQGGYPYPQQQAYPQQYPQ
QQPAYPQQPYPQQRAYAQQPYPQQNYQQQPYPQQPYPQQAYPQNYTNQGYGLVPYVPQPP
APYPTRNAQLQDEQNRQYPQPAQTQPLTVEEELAQINREQTSTVSGGIQFRNRDGENGLS
NLTDIEAPLQGRIRAGDGHVTVQVTPVTLDAGTASNNSNTIARFGSAQTDQTSNPYGSQT
ATGVGVGVGYDYRGLKADVGATPFGFREQNLVGGVQYKGGLTDKVSYRLTAGRRAVTDSL
LSYAGARDQLANLEWGGVTSNGIRADVGWDDGTSGLYANAAWDYYDGHHVASNNSVKGGG
GVYTRLYKDADQTFTVGVNTTLMHYNKNLSYFTYGQGGYFSPQQYAILNLPIEWTGRNGP
FTYDLKASIGVQHYRQDDSPYFPIDPGLQSSAASRFASAKQPVPDTNAVYPGQSKTGVSY
SIDAVGEYQLAPQLAVGAAASFGNAYEYREFVAAVYVRYAFTKQTGLAIFPPTALRSQYL
PVNE