Protein Info for QEN71_RS08535 in Paraburkholderia sabiae LMG 24235

Annotation: peptidoglycan DD-metalloendopeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF01476: LysM" amino acids 67 to 109 (43 residues), 52.6 bits, see alignment 3.5e-18 PF01551: Peptidase_M23" amino acids 226 to 319 (94 residues), 93.5 bits, see alignment E=7.5e-31

Best Hits

KEGG orthology group: K06194, lipoprotein NlpD (inferred from 80% identity to bph:Bphy_3262)

Predicted SEED Role

"Membrane proteins related to metalloendopeptidases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>QEN71_RS08535 peptidoglycan DD-metalloendopeptidase family protein (Paraburkholderia sabiae LMG 24235)
MSKNGFDRTWASFASFTLALMLGACAHVGEQEAKNNDAASTAQTATDAASAAPAPQMVAQ
PVPPVIYKVRRGDSLVRIARSHNVTVKQIVAWNHLKPSARLHIGQPLKVSSPDAVKMVAV
PAAPSAGQATGKASNGVAAVASGASNPAVSSGAGNATNATSATSATNAQNATPNTMTATA
PATGAPAPSAAEAREVNAEVARHAKGVALIWPAQGNVVGGFQPGETRGIEIGGKAGDPIR
AAADGKVMYAGTGLNEYGSLIIVQHNKDFLTAYAHNRKLLVKTGDIVRKGQQIAEMGNEN
NSRVSVLFELRHDGKPIDPMPYLPHQRG