Protein Info for QEN71_RS08165 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 474 transmembrane" amino acids 27 to 50 (24 residues), see Phobius details amino acids 62 to 85 (24 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 180 to 201 (22 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details amino acids 303 to 324 (22 residues), see Phobius details amino acids 332 to 351 (20 residues), see Phobius details amino acids 357 to 380 (24 residues), see Phobius details amino acids 399 to 420 (22 residues), see Phobius details amino acids 425 to 444 (20 residues), see Phobius details PF07690: MFS_1" amino acids 32 to 352 (321 residues), 152.1 bits, see alignment E=2e-48 amino acids 308 to 446 (139 residues), 36 bits, see alignment E=3.9e-13 PF00083: Sugar_tr" amino acids 55 to 454 (400 residues), 162.1 bits, see alignment E=2.2e-51

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 96% identity to bph:Bphy_3311)

Predicted SEED Role

"Niacin transporter NiaP" in subsystem NAD and NADP cofactor biosynthesis global or NAD regulation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (474 amino acids)

>QEN71_RS08165 MFS transporter (Paraburkholderia sabiae LMG 24235)
MPTTASAKRASAAARLERLPFSGYHRTIFIIIAIAFFFDSVDLGTMTFVLGSIKTEFGLS
SATAGLVASASFFGMVLGAAVAGLFADRFGRRPVFQWSMVLWGAASYLCSTAQSVDALIV
YRVLLGIGMGMEFPIAQTLLSEFVPTASRGRLVALMDGFWPLGFITAGCVSFFVLPHFGW
RTVFALLAIPAVFVLIVRRIVPESPRWLEHRGRLAQADAVLGSIEAKVMKSKGLRSLPAP
SMLADSAEPSKHGAFREIWSAAYRRRTVMVWALWFFALLGFYGLTSWLGALMQQAGFAVT
KSVLYTVLISLGGVPGFLCAAWLVERWGRKPTCIASLLGGGVMAYAYGQTALHADSITLL
ICTGLAMQFFLFGMWAVLYTYTPELYGTGARATGSGFASAIGRVGSLIGPYAVGVVLPIF
GQGGVFTLGALSFGVAALAVWVLGIETKGLSLETLVSHVDDDASEWRVTADDAR