Protein Info for QEN71_RS07190 in Paraburkholderia sabiae LMG 24235

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 344 to 363 (20 residues), see Phobius details amino acids 370 to 389 (20 residues), see Phobius details amino acids 401 to 421 (21 residues), see Phobius details amino acids 433 to 460 (28 residues), see Phobius details amino acids 473 to 497 (25 residues), see Phobius details amino acids 537 to 557 (21 residues), see Phobius details amino acids 870 to 888 (19 residues), see Phobius details amino acids 895 to 916 (22 residues), see Phobius details amino acids 922 to 943 (22 residues), see Phobius details amino acids 968 to 987 (20 residues), see Phobius details amino acids 997 to 1021 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 17 to 1018 (1002 residues), 538 bits, see alignment E=2.1e-165

Best Hits

KEGG orthology group: None (inferred from 97% identity to bph:Bphy_1266)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1040 amino acids)

>QEN71_RS07190 efflux RND transporter permease subunit (Paraburkholderia sabiae LMG 24235)
MSGMHDEEGRFNLSAWALRHQALVVFLIALSTAFGILAYTKLAQSEDPPFTFRVMVIRTF
WPGATARQVQEEVTDRIGRKLQETPAIDFLRSYSRPGESLIFFTMKDSAPVKNVPETWYQ
VRKKVGDIAQTLPQGIQGPFFNDEFGDVYTNIYTLEGDGFSSAQLHDYADELRTVLLRVP
GVGKVDYFGDPDQHIYVEITNTQLTRLGISPNQLAQAINSQNSVSPSGTLTTHDDRVFVR
PTGQFKDLNALADTLIRINGRSFRLGDIATIKRGYDDPVVTQMRFAGKPVLGIGVTMQTG
GDVIHLGKALDAKMTDLQAHLPAGLKLVEVSSMPHAVAHSVDDFLEAVAEAVAIVLVVSL
VSLGVRTGMVVVISIPVVLAVTALCMYLFDIGLHKVSLGTLVLALGLLVDDAIIAVEMMA
VKLEQGWNRTRAAAFAYTSTAFPMLTGTLVTVSGFLPIALAKSSTGEYTRSIFEVSAIAL
IASWLAAVVLIPMLGYHLLPERKRQAHEPEDHEHDIYETRFYRRLTGWITWCIERRFIVL
AITVILFIVSLAGFTLVPQQFFPSSDRPELLVDVRLPEGASFEATLRQAQRIEKALEGRP
EIDHSVDFVGSGAPRFYLPLDQQLQQPNFAQFVITAKSVEEREKLARWLEPKLRNDFPAI
RTRLSRLENGPPVGYPVQFRVSGDDIATVRSIAEKVAATMRANAGTANVQFDWDEPAERS
VRFEVDQKKARELGVTSADVSSFLAMTLSGYTVTQYRERDKLISVDLRAPKNERVDPSQL
LTLAMPTPNGAVPLGTLGHMRDDLEYGVIWERDRQPTITVQSDVRGNAQGIDVTHAVDKQ
LANIRSTLPVGYRIEIGGSVEESAKGQTSINAQMPIMIIAVLTLLMIQLQSFARVLMVVL
TAPLGLIGVVATLLLFGKPFGFVAMLGVIAMFGIIMRNSVILVDQIEQDIAQGHKRFDAI
VGATVRRFRPITLTAAAAVLALIPLLRSNFFGPMATALMGGITSATVLTLFYLPALYAAW
FRVRGNERDPRPEPSEHSGN