Protein Info for QEN71_RS06925 in Paraburkholderia sabiae LMG 24235

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1006 PF00656: Peptidase_C14" amino acids 4 to 192 (189 residues), 35.7 bits, see alignment E=1.1e-12 PF00270: DEAD" amino acids 286 to 448 (163 residues), 70.3 bits, see alignment E=2.6e-23 PF00271: Helicase_C" amino acids 583 to 659 (77 residues), 24.8 bits, see alignment 3.2e-09

Best Hits

KEGG orthology group: None (inferred from 74% identity to rpe:RPE_2500)

Predicted SEED Role

"Putative ski2-type helicase (EC 3.6.1.-)" (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1006 amino acids)

>QEN71_RS06925 DEAD/DEAH box helicase (Paraburkholderia sabiae LMG 24235)
MAIKAILVGINKHLDSSIPELSGARRDATALWALFTDTIEGLSARLLVDEAATHTEVSSA
MLGTLAAASADDVVVIAFAGHGSPDGNLVLFDTNASDLAGTALSMAGLADAFKATKARAV
LCILDCCFSGQAPARVLETAARPRSAFALTGIYGEGRILLAACATNESAWEQPGTGHGLL
THAVIEALTGDAGESVSFPEIAGEIIRLARVEAERISVTQTPVFLGNVQGGLTFPVLKRG
DNYAAAFPARAVQQMSGSFAEFSAHGFPPEIVERWSADFPKGLNTLQLKAVNEFGVLSGN
SLLVVAPTSSGKTLVGEVAAIQAVTAGKKAAFLLPYRALVNEKFEEFTERYAAAGLRVVR
CSGDATDGIGPVLAGRYDLGFFTYETFLNLALGSPRLLTQLGLVVLDEGQFITDPQRGIT
VELIFSLLLRARQRSIEPQLVILSAVIGNLNSFDRWLDIPLLLSRERPVPLIEGVLDRRG
TFQYVDTDGSTKTEALLPSHRIVQRRDKPSSQDVIVPLAQKLVGQGEKLLIFRNMRGPAQ
GCAKYLAKELGLPPATAVLDVLPTQDLTGASQDLRECLSGGTAFHNTNLLRAEREAVERG
YRSATGGIHALVATTTLAAGINTPASTVVLAENEFVGEDGRQFTVAEYKNMAGRAGRLGF
NEIGKAIILAETPMERAQLFQRYVLGVPEDVKSSFQQRDLPTWTLRLLSQVRGVRANEIP
GLLVNTFGGYSASRANPQWVAMVERDINTLVDRLLQAGLAEREGDLIHLTLLGRACGSSS
LSFESSLRLVELMGHLNVAQTPPGHILAMVQVLDELDAIYTPVMKRGQSESVRAGEAAQR
FGHEMPQMLQRYCRDQIEFWARCKRAALLHDWIEGTPVDVLEKRYSTTPFAGAIGYGNII
GIADATRFHLRSAHQILATLFPDQPDFLKSLDEILQRLEFGLPSAALPLTKVSMRLTRGQ
CLELLSIGVRNEDDLKNLDEDRLRCCVGTGTATLLRPRSDATGVGA