Protein Info for QEN71_RS06445 in Paraburkholderia sabiae LMG 24235

Annotation: CDP-archaeol synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 transmembrane" amino acids 6 to 39 (34 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 81 to 98 (18 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 211 to 231 (21 residues), see Phobius details PF01148: CTP_transf_1" amino acids 3 to 272 (270 residues), 201.6 bits, see alignment E=2.2e-63 PF01864: CarS-like" amino acids 168 to 265 (98 residues), 22.8 bits, see alignment E=8.2e-09

Best Hits

KEGG orthology group: K00981, phosphatidate cytidylyltransferase [EC: 2.7.7.41] (inferred from 98% identity to bph:Bphy_1333)

Predicted SEED Role

"Phosphatidate cytidylyltransferase (EC 2.7.7.41)" in subsystem Glycerolipid and Glycerophospholipid Metabolism in Bacteria (EC 2.7.7.41)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.7.7.41

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>QEN71_RS06445 CDP-archaeol synthase (Paraburkholderia sabiae LMG 24235)
MLKTRVITAIVLLAILIPVTLWAPIGGFGALIAFVVVFAAWEWARLLKLPGAGPVIYAII
AALALVASTKLGTGVTAPRPLFQASSIFWIFAGPFVLLRKPTLAQGAWRPFLLLAGVVVF
AACWHALVAARMAGVPFVLSLLLVVWLADIGAYFAGKAFGKHKLAPSISPGKTWEGAIGG
WLAVMIVAAVAVATHAFAPTLFSALLDHLGTARAFATLTLLVVFSVVGDLFESMLKRQAG
VKDSSNLLPGHGGVLDRIDALLPVLPLAMLVLS