Protein Info for QEN71_RS06185 in Paraburkholderia sabiae LMG 24235

Annotation: dipeptide ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 PF00005: ABC_tran" amino acids 8 to 165 (158 residues), 109.2 bits, see alignment E=1.2e-34 amino acids 290 to 441 (152 residues), 120.8 bits, see alignment E=3.2e-38 PF13304: AAA_21" amino acids 116 to 204 (89 residues), 32.3 bits, see alignment E=4.7e-11 PF08352: oligo_HPY" amino acids 220 to 246 (27 residues), 27 bits, see alignment (E = 2e-09) amino acids 492 to 516 (25 residues), 24.9 bits, see alignment (E = 9.2e-09)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 95% identity to bph:Bphy_1380)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (519 amino acids)

>QEN71_RS06185 dipeptide ABC transporter ATP-binding protein (Paraburkholderia sabiae LMG 24235)
MFGNTVAVDDVSLAIGRGERVALVGESGSGKSVTALSILRLLNDAQTSGAVRFDGEDLLM
KSEREMRGLRGSDIAMIFQEPMTALNPLYTIGEQIAETIVMHDGVSAGEARKRAVALLER
TGITEPGKRVNSYPHQLSGGQRQRAMIAMALACRPRLLLADEPTTALDVTIRAQIVELLL
ELQREEAEKRGMAVLLITHDLNLVRHFAQRVAVMEKGVLVESGPVETLFESPQHPYTQRL
LQSRPERAVVPVLPIAPVLLDARDVSVDFRTKLPGFSGWFRSGHFRAVADATVSVRQGET
LGIVGESGSGKSTLAMALLGLQKTSHGAIEFQGRALGSYRGREQTALRSNMQVVFQDPFS
SLSPRQTIERIVGEGLALHKPELAPDARRDKVISVLREVGIDRTALQRYPHEFSGGQRQR
IAIARALVLEPRILILDEPTSALDVSIQQQVLKLLAGLQRKYNLGFVFISHDLAVIGAMA
HRVAVMQNGEIVETGEVDQIFAEPSHPYTRKLLKAALTT