Protein Info for QEN71_RS06170 in Paraburkholderia sabiae LMG 24235

Annotation: extracellular solute-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 632 signal peptide" amino acids 1 to 48 (48 residues), see Phobius details PF00496: SBP_bac_5" amino acids 125 to 538 (414 residues), 235 bits, see alignment E=7.4e-74

Best Hits

KEGG orthology group: K13893, microcin C transport system substrate-binding protein (inferred from 95% identity to bph:Bphy_1383)

Predicted SEED Role

"ABC transporter, periplasmic substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (632 amino acids)

>QEN71_RS06170 extracellular solute-binding protein (Paraburkholderia sabiae LMG 24235)
MTTGTRRVEAPRPGWRTLIRPWSRAAFAMCAGSLFTLSSVTMQPAHAAYAIAQYGEPKYP
ADFKHFDYVNPDAPRGGTLVLANPDRSTSFDKFNPFTLRGNAAPGIGLLFESLATGSADE
VASAYGLLADDIDVASDGMSTTFHINPRARFSNGDPVTADDVKFSFDTLKSPKAAPQFAA
YFADITRCVIVDPATVRFEFKQHDRELPLLAGGMPVFSRKWGVKPDGSRIAFDQLAFEKP
IGSGPYLIESYDNGRTITYKRDPNYWGDKLPVRVGTYNFERINYKLYSDATARLEAFKAG
EYDALVENVARNWVRRDVGKKFDSGELIKREFPHHNGTGMQGFILNQRRPLFGDVRVRKA
LDLALDFQWLDRQLFYNQYKRIDSYFVNTDLQAKGLPSPGELKLLEPWRAKLEPSVFGVP
PKQPDTDPPGSLRANLLEARALLAQAGWTYRDGALRNAKGEPFVFEILDDSGSSAAFEPV
IAPYIRNLQKLGIEAHFRVMDFAVYQKRLDAFDFDVTTIRFPDVQVPGADMIDRFGSKAA
DEPGSGNLIGLKSPAVDSILRALVGAQTREQLVDSVHALDRVLINGYYMIPHWYSATHRV
AFKRGMAWPKTLPLYYTAEGWITSMWWFAAPQ