Protein Info for QEN71_RS06125 in Paraburkholderia sabiae LMG 24235

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 signal peptide" amino acids 1 to 59 (59 residues), see Phobius details PF13432: TPR_16" amino acids 81 to 136 (56 residues), 28.8 bits, see alignment E=8.8e-10 amino acids 144 to 186 (43 residues), 25.3 bits, see alignment 1.1e-08 PF13174: TPR_6" amino acids 105 to 136 (32 residues), 19.7 bits, see alignment 6.2e-07 amino acids 144 to 169 (26 residues), 15.1 bits, see alignment (E = 1.8e-05) PF14559: TPR_19" amino acids 121 to 170 (50 residues), 28.1 bits, see alignment 1.2e-09 PF13431: TPR_17" amino acids 127 to 159 (33 residues), 23.8 bits, see alignment 2.2e-08 PF13181: TPR_8" amino acids 139 to 169 (31 residues), 24 bits, see alignment 1.8e-08 PF07719: TPR_2" amino acids 139 to 170 (32 residues), 28.3 bits, see alignment 7.2e-10 PF13428: TPR_14" amino acids 141 to 181 (41 residues), 25 bits, see alignment 1.3e-08

Best Hits

KEGG orthology group: None (inferred from 90% identity to bph:Bphy_1391)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (266 amino acids)

>QEN71_RS06125 tetratricopeptide repeat protein (Paraburkholderia sabiae LMG 24235)
MKHSSGRARGATPLFATALRSTLSSTSGALSRQGLLAALSAACCGLALMTLPAAPAFAQK
ASTVSHGPAVRDATPDADASIQDKNWTAALAQLDARIAANPRDAQARFKRASVLARLNRD
DDAITAFTELTQTYPELPEPYNNLAALYAKQGRYTEARAALETAVKASPGYGLAYENLGD
LYLRLADQAYRRAQTLGAGNGTTSQRIADIEKIVTPRKTPVKKTSQPAAETDYTNRAMEN
ITNSQGFQFGGPNGSLATPPYVAPSQ