Protein Info for QEN71_RS03350 in Paraburkholderia sabiae LMG 24235

Annotation: sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 PF00005: ABC_tran" amino acids 20 to 162 (143 residues), 120.2 bits, see alignment E=2.1e-38 PF17912: OB_MalK" amino acids 236 to 292 (57 residues), 42.7 bits, see alignment E=1.7e-14 PF08402: TOBE_2" amino acids 285 to 362 (78 residues), 23.9 bits, see alignment E=7.5e-09 PF03459: TOBE" amino acids 309 to 357 (49 residues), 24.9 bits, see alignment 3.9e-09

Best Hits

KEGG orthology group: K02023, multiple sugar transport system ATP-binding protein (inferred from 98% identity to bph:Bphy_0631)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (371 amino acids)

>QEN71_RS03350 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC (Paraburkholderia sabiae LMG 24235)
MASLSIRDVYKTYPNGVPVLKGVNIDIEDGQFLILVGGSGCGKSTLLNMIAGLETVTKGE
IQIGGKTVNNLSPKDRDIAMVFQSYALYPSMTVRENISFGLNIRKVAKGEQDQIVARVSK
LLQIEHLLDRKPGQLSGGQRQRVAMGRALARDPAMFLFDEPLSNLDAKLRIEMRSEIKLL
HQRLGTTIVYVTHDQIEAMTLGDRIAVMKDGIVQQFGAPQEIYDSPSNLFVAGFIGAPPM
NFIQGKVVEQGSGIGLELDTGVKRSVLNLPFNGAVKGHVGKEVILGLRPERITDTRNAHN
VEDGKLQPIEVKVDVIEPTGPDTLVFAQVNGKRVVSRVHPGANPQPEQNMSLMFDVSKAV
LFDPQTEERIA