Protein Info for QEN71_RS03160 in Paraburkholderia sabiae LMG 24235

Annotation: proline/glycine betaine ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 transmembrane" amino acids 46 to 65 (20 residues), see Phobius details amino acids 71 to 90 (20 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 140 to 167 (28 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 111 to 268 (158 residues), 104.4 bits, see alignment E=3.2e-34

Best Hits

KEGG orthology group: None (inferred from 95% identity to rcu:RCOM_0056180)

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (329 amino acids)

>QEN71_RS03160 proline/glycine betaine ABC transporter permease (Paraburkholderia sabiae LMG 24235)
MNSIFLHLSIADWVNDHVQSFVAAYGDSFHDLSTALLRYVLVPLEGALRATPPWAILIAV
GLLTLNATRRIGIAGFFVLLLYVIGCFGLWDKLMQTLALMLVATVLSVVLGVPLGIWASR
SPWMRRVLLPVLDIMQTLPSFVYLIPVLMLFGLGKVPAILATIIYALPPLIRLTDLGIRH
VDADVVEAARAFGTTRWQLLVNVQLPLARPSIMAGINQTTMMALSMVVIASMIGSRGLGE
DVLAGIQTLDIGKGMQAGIAIVILAIVIDRISQGYGQDRRTRRLVAQRRKAKAASRIPYR
NAGAARDEEPAVAGNENATQSGLETRAAD