Protein Info for QEN71_RS01345 in Paraburkholderia sabiae LMG 24235

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13531: SBP_bac_11" amino acids 54 to 298 (245 residues), 37.6 bits, see alignment E=3.2e-13 PF01547: SBP_bac_1" amino acids 54 to 298 (245 residues), 43.1 bits, see alignment E=8.3e-15 PF13343: SBP_bac_6" amino acids 94 to 301 (208 residues), 100.3 bits, see alignment E=2e-32

Best Hits

KEGG orthology group: K02055, putative spermidine/putrescine transport system substrate-binding protein (inferred from 98% identity to bph:Bphy_0221)

Predicted SEED Role

"ABC-type Fe3+ transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>QEN71_RS01345 ABC transporter substrate-binding protein (Paraburkholderia sabiae LMG 24235)
MKPTTLRCFLLASGVAAAGHVLAAPPEALVAAAKQEGQLTVIALPHDWCGYGPMIADFQK
KYGIKVNELNPDAGSGDEIEAIKANKGNKGPQAPDVIDVGLSFGPAAKAQGLLQPYKVAT
WKSIPNDNKDAEGYWYGDYYGVLSFEVNADMIDKVPTDWSDLQKADYKNAVSLAGDPRSA
NQAIQGVYAAGLSASKGDASKAAQAGLKYFADLNKNGNFVPVIGKAASLAQGTTPIIVRW
DYNALADRDTLKGNPKVQVVVPKTGVVAGVYVQAISAYAPHPNAAKLWMEYLYSDEGQIG
WLTGYCHPIRYNELVSQKKVPQALLDKLPPASAYKNAVFPTLQQQDATKDVVTKQWDQVV
GANVK