Protein Info for QEN71_RS01110 in Paraburkholderia sabiae LMG 24235

Annotation: YchJ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 PF17775: UPF0225" amino acids 47 to 143 (97 residues), 86.3 bits, see alignment E=1.1e-28

Best Hits

Swiss-Prot: 51% identical to Y2036_BORPE: UPF0225 protein BP2036 (BP2036) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 90% identity to bph:Bphy_0175)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>QEN71_RS01110 YchJ family protein (Paraburkholderia sabiae LMG 24235)
MTASAKPRPVDCPCGGAAPNRRDTDKPPRFADCCGRYIDGGAAAPNAFELMRSRYSAYVL
GESHYLRETWAPQTCPADLDVDTDAPDAPRWLGLQIKRFTPLDDTHAEVEFVARYKVGGR
AHRLHESSRFIRGDDARWRYVDGDVSDR