Protein Info for QEN71_RS00690 in Paraburkholderia sabiae LMG 24235

Annotation: DEAD/DEAH box helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1721 PF00270: DEAD" amino acids 88 to 271 (184 residues), 86.8 bits, see alignment E=2.2e-28 PF00271: Helicase_C" amino acids 983 to 1042 (60 residues), 29.2 bits, see alignment (E = 1.4e-10) PF09369: MZB" amino acids 1500 to 1599 (100 residues), 39.1 bits, see alignment 1.5e-13

Best Hits

KEGG orthology group: None (inferred from 74% identity to rpx:Rpdx1_0870)

Predicted SEED Role

"Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1721 amino acids)

>QEN71_RS00690 DEAD/DEAH box helicase (Paraburkholderia sabiae LMG 24235)
MKAFEFDHNLIKNYERFSRSFTEIRASDIKKKVEEEYEAGRFWPGSLLSLNPRYRDGPTV
DELVASGDLDKATGSIFRIDGNPIGLRRHQAQSIAKARKGDSYVVTTGTGSGKSLCFFVP
IVDAIVRALQSGAPRRTRAIIVYPMNALANSQIKEIDKFISQSGLPETLKPVVKRYTGQE
SREERQRIAENPPDILLTNFMMAELLLTRQDDLDSRVIANAAGLEFIVLDELHTYRGRQG
ADVAILVRRLRNRCAPNNEPIYIGTSATMSSEGSDESKALAVAAVASRLFGADVGPDAVI
DEALQRATDDSLTLEIIKPQLASVLTNPLSEVLTDDILRKHPLAVWAELAIGLKDEQELR
RQAPVPFGDAVERLAIDSGVDREICREAFERFLTHVSLPEKDRGGKGDGAFLAFKLHRFI
SGAGEIFTTLTGRPRRVLFEGQLEDPQAPGNRLYPTRFCRACGQEVHVVTKMDSAGGPIF
LPRSIDDAPLDGEEADAAGYLTPVGDGDSDYIFNGEIDTYPEDWREEYKGDERLRANRKE
RAPARITIGPDGRYSPGGASFWFIPGRFGFCPSCHEQPHPNMRERSKLAGLSGEGRTSAT
TLLVATALEWMSEPDSGVPPEKRKLLGFTDNRQDAALQAGHFNDFLFVSLLRGAMLRAVL
DAGPEGMSEEEFGLKTVRALGFTAVNKDARVHWMLEPEAGAVIREDAQRALAKVLAHRVW
TDLRRGWRFTNPSLAELKLLAVEFVGLSDIAENHAALSNVLPAFGSMEVEQRRKVVHAIL
QFFLEGLAVNTEALDRTVLDGISQKSRGVLRMPWAIDQKETLRGNTTLFLQAPGKDRVNL
REEQTILRAGHNSRLGRLINRKSMIGTRLKKDDYLAFMTGLMGILQREGLVMPVEIEADL
SGWRLAPSAVRIVAGPAALGQDVKGNSFFTGHYSDIAADLKAGLGSFQGLEAREHTAQVT
QRQREWREWRFRFEASDRELLKDKVAELKAAGESNQFLPALFCSPTMELGVDISALNAVY
LRNVPPTPANYAQRAGRAGRSGQAAVIVTYCAAQSPHDQYFFNRRNDMVAGVVRPPALDI
TNEELVRSHLHAVWLAETKLALSPDIPEILDLTKTGYPLKPDVLETIRMPSLVTASRAPM
EQVLSKILDSVGGTRPVWLDDQEAFIVSVATNAPDRFNEAFDRWRELYHSARSQLAEANK
NSMNAGLSKADRQKIKASQMQATDQLAILEQGKASNGSDFYSYRYLATEGFLPGYNFPRL
PLYAFVPGDGKTGSFLQRARFLAISEFGPRSLIYHEGRAYRVMKAKLPPEVRSGDGLVTK
DILICPNCGACHEREAERCHACHAPMAGGLLVQRTLRIDNLEAAPAERITANDEERVRQG
FDLQTVFSWPRKDGRVHVTEAEFRCGDTPVLTLQYANSAEISRINKGLKRRKITSPLGFN
IDPRTGYWAKADDEGVDADSPPDIAKPVRIVPIVRDHKNALLLRFNDPETLARETIATVQ
HALMRGIGLEFQLEEGEILGEPLPERTNRRSILAYEATEGGAGVLNRLIDDPKALGRVAR
AALSLMHFDQVDEAIAAGDASLLMDRPSDACVRGCYRCLLSYFNQPDHELIDRTSQQSKR
MLVDLARGDVHVTRTVGLDDAPEGWFKAFKHAGLPRADAEPATLGGQEFPYVWRDYRVAA
TAETLTDAAQSFSDDMGWTLFELPQEPGPDLPANFIAALKE