Protein Info for QEN71_RS00520 in Paraburkholderia sabiae LMG 24235

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 66 (27 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 153 to 179 (27 residues), see Phobius details amino acids 194 to 211 (18 residues), see Phobius details PF01810: LysE" amino acids 17 to 212 (196 residues), 110.7 bits, see alignment E=3.2e-36

Best Hits

KEGG orthology group: K05835, threonine efflux protein (inferred from 94% identity to bph:Bphy_0100)

Predicted SEED Role

"L-lysine permease" in subsystem Lysine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (213 amino acids)

>QEN71_RS00520 LysE family transporter (Paraburkholderia sabiae LMG 24235)
MHHYLPILLQIAIVYLIALISPGPNFFMITQLSLAGRRGLGAASALGVGTGSTIWASLAM
LGFATVLQQIDWLYNGIRISGAIYLVWFGIKLVRASTKRGEPIVVNVETPVANDRGAYFR
AWRSGMLTCLTNPKSCAFWTSIFATLFPAHPPLWFYGVALAMIGMMSVGWYGSVALMFAT
ERTQRGYRRLRRPIDGVCGAVLVGLGAKLAAES