Protein Info for QEN71_RS00405 in Paraburkholderia sabiae LMG 24235

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 244 to 264 (21 residues), see Phobius details amino acids 275 to 295 (21 residues), see Phobius details amino acids 306 to 323 (18 residues), see Phobius details amino acids 329 to 354 (26 residues), see Phobius details amino acids 366 to 384 (19 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details PF07690: MFS_1" amino acids 45 to 261 (217 residues), 96.9 bits, see alignment E=1.2e-31 amino acids 246 to 415 (170 residues), 37.6 bits, see alignment E=1.3e-13 PF00083: Sugar_tr" amino acids 72 to 219 (148 residues), 27.2 bits, see alignment E=1.8e-10

Best Hits

Swiss-Prot: 45% identical to YYBF_BACSU: Uncharacterized MFS-type transporter YybF (yybF) from Bacillus subtilis (strain 168)

KEGG orthology group: K08224, MFS transporter, YNFM family, putative membrane transport protein (inferred from 95% identity to bph:Bphy_0084)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>QEN71_RS00405 MFS transporter (Paraburkholderia sabiae LMG 24235)
MTASSDPSRPAASSSFASSSASPSGAPYLERGTRAYWRASLALLFAGYATFSLLYCVQPL
LPAFSASFDVSPAQSSLSLSLTTAALALAVFIAGFVSEGWSRHRLMTASLTASSLLTLAV
AFTPQWHALLLLRALEGLALGGVPAVAMAYLAEEVHPDGLGLAMGLYVGGTAIGGMAGRV
ITGVVADLFSWRVAIGTIGVLGILSMLAFRSLLPPSRHFVPRCGLGFAHHRTALTKHFRR
PGLPLLFLMGFVLMGSFVTLYNYIGYRLLAPPFGLSQTAIGGIFVVYLTGVVASPWSGRM
ADTFGRGRVLTGSIVIMLCGLLMTTTQSLVLIACGIACVTFGFFAGHAVASGWVGRIAKE
AKGQAAALYLLAYYLGSSIVGSYGGRVWAVYAWTGVAALVGGLLLIGILASTRLRARERI
GAA