Protein Info for Psyr_4962 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: ImcF-related:Protein of unknown function DUF1215

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1310 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 36 to 57 (22 residues), see Phobius details amino acids 442 to 463 (22 residues), see Phobius details PF14331: IcmF-related_N" amino acids 183 to 443 (261 residues), 187.9 bits, see alignment E=4.5e-59 PF06761: IcmF-related" amino acids 498 to 918 (421 residues), 147.7 bits, see alignment E=1.1e-46 PF21070: IcmF_helical" amino acids 1074 to 1172 (99 residues), 39.8 bits, see alignment 8.6e-14 PF06744: IcmF_C" amino acids 1182 to 1283 (102 residues), 73.8 bits, see alignment 2.4e-24

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 100% identity to psb:Psyr_4962)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZLI3 at UniProt or InterPro

Protein Sequence (1310 amino acids)

>Psyr_4962 ImcF-related:Protein of unknown function DUF1215 (Pseudomonas syringae pv. syringae B728a ΔmexB)
MKTLLRLLKSFWFLVPILWLISLAVCWFFAPRISWLQGYTLEAMAIISAFYLLLIVLRQY
RRIRTEHNLENLVQIEVDRSLKSTGEFRDQQVLRDRLKHAIAMLRTDRSAGGGGSSALYD
LPWYLVIGMSAAGKTSLLTRSGLSASIASSANDTESGTQHCDWYFSPEAVMIDTAGRYLR
DDQSASEFAAFLRMLKKQRSKAAVNGLVLVVSLPELLAASSAERNEMGARLVTRIEEYTD
CLDANPPIYLMLTKTDQLPGFNQAFDGMDLNERQQPLGMTFGLNEINTESLRTVLDRKLA
NLQAHVSRHVDAQIIALGADANSALLNFPNYFAELSAILEQFLQHFARSNVNGTQLLLRG
LYFTSALQTDKQLTPVYEDELSESFVLRPAKPYGAVEEEEEEEEHRKISDRSYFITDTFR
RVIFPDRDLTLYQSRHGRDRSIGPIVIAAALFAGLAFIGWQALSFQKNREWLANISQQLR
ELEQSPDRAQRLASGQGLELLRNQLATIEKYRTKGVPLQLSGGLYRGDDIYFATQTAYLQ
QLRTQALEPITLKLQLQMREFNEFAKTMDPQYGFGAAPAGSDSKTGKARAQGRKLLDRGA
RNVAAGRPTSLSSIPRSTGDVTNRLTGAARNTASQTRSEAIAALRNPATANDAAELSATT
GGLSLSEEMLGRLDERQVASIIESYNALKLYLILTQPTTHPETEFVNAALPVAWADISSE
ANPISDDVIEDNSPVYVQLLKNGDAPAMPRNEQLIDETRKSLKFFMISSSLVDREYLRLQ
LESSRQFPAIGLNDLVPMPGRQLLYGSEAVPAIFTRQGWEEFVKPELIKLVSGNLRNESD
WVLDGEGGDSVVQKANFVREFMSRYKRDYTKVWYTMIDSVGVRRFSDMANATQQLSLLSD
VRNSPVKLLLASVNDNTQWDVPAVREAQQTGVKRDDGFWGKVTGIFDNKEAAASVLVSPL
PAVDDGSLAKRFEPVSRVFATQNAEGADSTIMDRYLAALRKLKVRMNNIQRSQDVGKSSK
QLISETLEGQPSEVTNVRNYVETTVDTSQGGLSTSLQSLFSLPIQFAWETLRDPAGEQIA
KAWAKQVAKPWEQVMAHRYPIAADSRNEASVKDLQRFVDPESGLLPNFKRNEIGNLSDGE
GLGMGSGAKAAPLVNPKMVSNIDKASSLGEVIASLSDRDNGFEIMLEPSAYFTDIIFTLD
GQEQHYRNGKTSWSRFSWPGTTTAPGARLDVVTLSGERITVFDYTGRWGLLRMNDSARVA
DLDGIQQRFSWNTAKGPVSLVVRNYGGVKLTDLANVKALSALNATDGRTK