Protein Info for Psyr_4664 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Filamentation induced by cAMP protein Fic

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 PF13776: DUF4172" amino acids 6 to 87 (82 residues), 101.9 bits, see alignment E=1.9e-33 PF02661: Fic" amino acids 114 to 227 (114 residues), 55.5 bits, see alignment E=8.4e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_4664)

Predicted SEED Role

"Fic family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZMD1 at UniProt or InterPro

Protein Sequence (376 amino acids)

>Psyr_4664 Filamentation induced by cAMP protein Fic (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSEHLWIWQQPDWPRFHWREERLAPLIRACAKAQGRLLGMSGAVGGDAQMCEGLNALLQN
IVTSSAIEGERLNADSVRSSLARRLGIADNGKHSPRSEGLAELMLDATRGHDQPLDLQRL
CTWHRWLFPEEDSFVSARILVGQLRSDEPMQVVSGRLDRPIVHFEAPPRAGLEQQLEDFL
DWFASSQKDPTLDPFVRAGIAHFWFVTLHPFDDGNGRLTRAITDLALTQGDQQAIRLFAM
SASILADRAGYYHVLETSQKSTTDITEWLEWFLRTLLKSIENALVHIERVLGKTRFWQLH
RDNGLSAEQVKVLNRLLDGGERGFENGLSAAQYQAVAKVSKATATRHLSDLLAKNCLVRL
PGGGRSTRYQINRPLQ