Protein Info for Psyr_2598 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: conserved hypothetical protein, putative DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1945 PF13195: DUF4011" amino acids 376 to 546 (171 residues), 153.8 bits, see alignment E=1.1e-48 PF13086: AAA_11" amino acids 663 to 730 (68 residues), 29.5 bits, see alignment (E = 2e-10) PF13087: AAA_12" amino acids 1367 to 1565 (199 residues), 55.6 bits, see alignment E=1.7e-18 PF18741: MTES_1575" amino acids 1614 to 1711 (98 residues), 112.8 bits, see alignment 2e-36 PF11784: DUF3320" amino acids 1802 to 1851 (50 residues), 56.5 bits, see alignment (E = 6.5e-19)

Best Hits

Predicted SEED Role

"DNA helicase related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZT85 at UniProt or InterPro

Protein Sequence (1945 amino acids)

>Psyr_2598 conserved hypothetical protein, putative DNA helicase (Pseudomonas syringae pv. syringae B728a ΔmexB)
MNIKIEALIARKIGFASHQNAVPLVRELSIWNQEETGFENLTLTLSTDPDFVESRTWRID
RIHAGDRLSISERDIKPNAGYLSGLTESLSADVVMRLSQGDNVLVEQRFPTELLARTEWG
GLSAMPELLAAFCMPNDPAVDRVLKAASQVLRRAGKKDGIDGYESKSRTRTWELASAIWS
AVCSFQLSYALPPASFEQQGQKVRPPSVVLENGVATCLDTALLFAAALEQAGLNALLIMT
KGHAFAGVWLQPQEFSQLLTDEASAVRKRLDLKEMVVFETTLSTQTPAPGFSQAITAAER
QLDDEQFIMAIDLHRARMQKIRPMALVSVTEGSDETADAPPTIEGLEEAPALPGFDVEIN
TDSEGPAGKLTLWQRKLLDLTTRNRLLHLPDSAKGVRLICPDPAVLEDLLSSGQRIRIVS
VPDLKSSGRDVALYEQQNNENLVDEVARQALARGEVLATLEKVKLEATLIDLFRKARSDL
EEGGANTLFLAIGFLKWKKSADDPKTYSAPLILLPVKLERKSALSGVTLSLLDEEPRFNL
TLLELLRHDFELLIPGLDGELPSDESGIDVTGIWNMVRRAVRDVPGFEVSTELVLGTFSF
AKYLMWKDLNANAAQLLQSPLVKHLLAPSEGDEGFSGSDEFPRPEQLDSSVTPAMLFAPL
PADSSQLSAVVASAGTHSFVMDGPPGTGKSQTIANMIAHNLALGRRVLFVAEKRAALDVV
YRRLAEKGLGEFCLELHSSKASKVEVLKQLDRAWDVSDALSAEEWEREATRLQTLRSRLN
ELVEVLHRRWSNGLSLHQAIGRVVRDHGPQTPRLSWPSGTQHDADEYSQLLDLSRRLGLN
GDAARNLSGKFGALAQTQWSNAWQAHIANAARELPQALDALNAASEKLLGLTHLNLPVAE
VAQVQHLDELATLVVESYGLNLSFAFAPDAVARIAAARRACQLIESYRELEEGLSLDYAD
EACRRIPVEAMRSEWRDAEGKFWFLATFAKKKVAKKLASSGGAAGLPDTLGDLAIFERLH
AQLNELDTLAGGLQSIPGWQGLSSDVSQIFRAASLAENLRGLMSGLAESPDHLVSLRSAV
ARLVVEANEMLAPGGQIGVALSALQQALSRYEDAARLFAELSAVGPDTQSSVGALRATSL
SIQQQEEQLKAWCDWCRVREQAGEAGLASLARAVEAGSLSPAASEETFITAYAHWFATQG
IDDEPLLRNFVAAEHMSDIGAFVRLDDEMAKLTVRYIRAKLCGLIPSKNDIPKSSGFAIL
KHELQKSRRHKPVRQLAVEMGDALNRLAPCMLMSPLSIAQFLPADQPPFDLVIFDEASQI
APWDAIGSIARGRQVVIAGDPRQMPPTNFFNRGPNASDDDTAEDMESILDECLGAGVPSH
SLSWHYRSRHESLIAFSNHRYYDSNLITFPAAETRASAVEWRRVEGVYAKGKGRYNQAEA
EAIVSETVKRLTDPAFVAAGHSIGIITLNADQQKLINDLLDNARKQYPQIEPFFQDTQTE
PVVVKNLETVQGDERDLIMLGIGYGPTEPGAQVMSMNFGPLNKDGGWRRLNVAITRSRRE
MLVFSSFDPSMIDLNRTNARAVRDLKHFIEFAQRGPKALAEAVQGSVGGYDSPFEEAVAQ
GLRRLGWQVIPQIGVSRFRIDLGVVHPDRPGDYLAGVECDGATYHSAATARDRDKVRGAI
LSGLGWSLVRLWSTEWWVDKEGALQRLNAALNDLLAQSRAETEDHRITEPPTAEPVVIDF
SNGPRISGESSEELAAPISELSAETGEIRIARSHGLPPEAGGQKGIYRIADLSALAPLIQ
ADQFHLPGYTPVLRQLIEEVLRQEAPILDAVLVQRIARVHGFQRSGRLIRDRVLELAEQH
HYVQQAGFDEVFVWHAEGDVAGWTTYRIPASSEDTRAIEEVAAEELSIAAANVDAEDKAL
EVARLFGIKRLTGPARERMERIFSA