Protein Info for Psyr_2128 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Protein of unknown function DUF6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 15 to 30 (16 residues), see Phobius details amino acids 42 to 69 (28 residues), see Phobius details amino acids 81 to 101 (21 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 132 to 150 (19 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 214 to 233 (20 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 270 to 288 (19 residues), see Phobius details PF00892: EamA" amino acids 16 to 148 (133 residues), 52.1 bits, see alignment E=4.1e-18 amino acids 158 to 282 (125 residues), 36.2 bits, see alignment E=3.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_2128)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZUK1 at UniProt or InterPro

Protein Sequence (295 amino acids)

>Psyr_2128 Protein of unknown function DUF6 (Pseudomonas syringae pv. syringae B728a ΔmexB)
MSTASTPSSGVNQPLKGIGFILLATFLFASHDTLSKYLSGFYPIILVVWARYLVHTLLMA
CIFMPSAGLRVLRTKRPGLQVLRALALLGTSLLFTSSLMFIPQAEATAVNFLAPLLVTAL
SVPLLHERVTRGQWIAVVVGFVGVMIIIHPGGELFTPAILLPLSSALCFALYQLLTRLVS
PFDSPTTSNFFAGLFNTLLMSALVPFFWEVPALKHLPFLLALGACGMSAHLLLTQAFRFA
APAMLAPFSYCQIVFAGLLGYLVFDHTPSPTAQAGIAIICLSGLAAAWQQRRKGG