Protein Info for Psyr_0627 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: Ethanolamine ammonia-lyase light chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 282 PF05985: EutC" amino acids 12 to 249 (238 residues), 318.9 bits, see alignment E=9.3e-100

Best Hits

Swiss-Prot: 92% identical to EUTC_PSESM: Ethanolamine ammonia-lyase light chain (eutC) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: K03736, ethanolamine ammonia-lyase small subunit [EC: 4.3.1.7] (inferred from 100% identity to psb:Psyr_0627)

Predicted SEED Role

"Ethanolamine ammonia-lyase light chain (EC 4.3.1.7)" in subsystem Ethanolamine utilization (EC 4.3.1.7)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.3.1.7

Use Curated BLAST to search for 4.3.1.7

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZYS5 at UniProt or InterPro

Protein Sequence (282 amino acids)

>Psyr_0627 Ethanolamine ammonia-lyase light chain (Pseudomonas syringae pv. syringae B728a ΔmexB)
MNELQDSAAPANPWLELRRLTPARIALGRTGTSLPTSAQLDFQAAHAQARDAVHLAFDHA
AISAQLTEKGRETLLLHSAAADRDSYLQRPDLGRRLNDESAQTLRDYAAAHPGGLDLAIV
VADGLSALAVHRHAVPFLIRLEEQASAEGWSLSPVIMVEQGRVAVADEVGELLGAKMVVI
LIGERPGLSSPDSLGLYFTYAPKVGLNDAHRNCISNVRLEGLSYGMAAHRLLYLMREACR
RQISGVNLKDEAELQTLESDGAGDHSDKPIGNFLLDGPAAPH