Protein Info for Psyr_0343 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 371 transmembrane" amino acids 174 to 197 (24 residues), see Phobius details amino acids 208 to 230 (23 residues), see Phobius details TIGR03696: RHS repeat-associated core domain" amino acids 92 to 171 (80 residues), 78.1 bits, see alignment E=2.8e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0343)

Predicted SEED Role

"YD repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q4ZZK7 at UniProt or InterPro

Protein Sequence (371 amino acids)

>Psyr_0343 hypothetical protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MAILCKYTYDPLDRVSTLTPLAQAVANRFYNGEQLMTELQGGRQRTCVRAGGQLLAQQLR
EGDEVVTTMIAGDRNNSVLHASEAGQQSDVVYTPFGHHQAVQASAELPGFNGEQPDPLTG
HYLLGNGYRAYNPVLMRFNSPDSMSPFGKGGLNAYAYCVGDPVNRVDPTGHFSALAALIS
GIVLSAAGAGAIATAAGLKDSDSTLGTTLTVVGSISLMAGLGAFATTGFKLKQTSVKLKQ
MRAKIKTGKREASDLASARKQSSARHAEALTRQADELTRHADELKGPPASSDSALTFRLE
LMEADVMKNGPYDYYSSSFLDPVMLNKIRDKDAKRVVVLDSTSRPPGLLTLTRIDDGQTL
RTKAHAIREIT