Protein Info for Psyr_0196 in Pseudomonas syringae pv. syringae B728a ΔmexB

Annotation: conserved hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1126 transmembrane" amino acids 702 to 723 (22 residues), see Phobius details amino acids 744 to 764 (21 residues), see Phobius details amino acids 803 to 823 (21 residues), see Phobius details amino acids 844 to 865 (22 residues), see Phobius details amino acids 876 to 899 (24 residues), see Phobius details PF20249: VasX_N" amino acids 27 to 177 (151 residues), 99.6 bits, see alignment E=1e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to psb:Psyr_0196)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q500A3 at UniProt or InterPro

Protein Sequence (1126 amino acids)

>Psyr_0196 conserved hypothetical protein (Pseudomonas syringae pv. syringae B728a ΔmexB)
MTDKSGTHTQRRAATFAKTPATATSLCPFRGPDIAIVPVRYALDRSRYDAAPEKLKPLLK
GSRWAVMPKLKTRSYTLRQLYDGYVYVYDETAGTFHEYFSSAANGHLSRIIWTDAQIGSD
RRSGADDGKPFLLYPRNNRLHIAFSAQQWTWRICEHLRSNPASRASWMKALDLKRYCMTM
AEPDTLPLNRIAEAVADIDKEHVVDDDRFADSAIPTSKASSEEADPLFSPIGADVFWQGS
VEDQDSSLLIALDDPLAIFNDLGMQLAADQAAYRNWQAEHEHKIQIAQTVTALCGAEGEP
EKLPASVRGNAALTHQYLSEVEAYFEQCMFEQEQIGNNTAPGGVLLLPDIFKSPQMRRSL
EMRYGSAPSDEALQAWKDRHKWRREVDLSGARQYLQQHLPTGDTLLQQVQDTQSDFRQWS
THLGTEPLKLFVDTSHPESLLYLQTVMLNLQIIYAQDNAASAWLAEQEANDSSLFGTLRY
GFSPALKHALHQEANALLNGLGDITNLATRIGELNGTLNHQGFADKPWMKALKQPVQDTF
KALGQLASDAGKATFESILLAWVPIDSRLAVGKQQNIVALIRTLLIGQILLDSKARIAID
HNMLAKLKTWISEWQVLNKQISDTRRSWLYPTAYNPRKSIASHLRVLEEKLRLHELSMPA
LLDFQNNQYARQLQDEIRLHVQSGKAITKEWLTSARRWLDGLGGIAGSITWGVIMLNFIN
TAFTYRDLTRDGDFSAKDLGKVTYGLGYSFNLLMAVFVEAPWAVIRDATPVLIDGKNVGI
LDRSAGYWRAKGNLVWGDAIRGFRVSMVAMGAFGVAAAVLEVLDIQDDLSRVNTSEEIIA
MQLKFASVLMMGAGSAIQLIAGIFPTTPLTAVAMSPWFSITLLLIGTVYLFATTALNYFK
QDSVGWWLRRCCWSRSIEYRYSTDAGGQHAEKLDLLTIQLSPQVHVKITTRLESRYLGKG
DYYSTAVQDGAGVQLLFPSAVRAQSVHFNIISSKRPWGVLPVEKIDSPINESFLNRGQFR
QAGQFGTLGNKAARNAHEDFTFPLMPHESEDLIWETWIPLEAEATYLELQIWYPDSLIKP
DQQDIGYLYQLKLNREGDTKVDGLITAELEVKALNRSTALTLEVAE