Protein Info for PfGW456L13_586 in Pseudomonas fluorescens GW456-L13

Annotation: Rtn protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 transmembrane" amino acids 218 to 241 (24 residues), see Phobius details PF12792: CSS-motif" amino acids 17 to 212 (196 residues), 89.2 bits, see alignment E=2.8e-29 PF00563: EAL" amino acids 250 to 481 (232 residues), 214.1 bits, see alignment E=2e-67

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_0048)

Predicted SEED Role

"Rtn protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QER2 at UniProt or InterPro

Protein Sequence (507 amino acids)

>PfGW456L13_586 Rtn protein (Pseudomonas fluorescens GW456-L13)
MAGSLFVAIHQVEQSESEEMNAQGERFLARLEQLFGQLRESLDDLEAQPLRGCDAEMIAT
LQQVTFNYRFVYEAAYMDSSRICSNRPRQEGLSLSRSPDIKGPTYSYWLNTTTEPDENRA
ALMLGRGNFRVATSRGHLTDMVDLSPGSSLLVVLDHGARAIPVLGASQVWPPAEAWPPKN
RDALQITQARLIYRMPTDNPEYQLVLISPRTGMHIPAVWWWLLPASLALGICVGFLVFLL
VRQRQSLDAELAGAIRRGELQVLYQPIFDLDSRNCVGAEALLRWRRPDGTLTSPDLFIPM
AENTGQIRQMTDFVLQRLLEQLGQLLRANPQLYISVNLAACDVMVPRIGQVMARLLTLHR
VAARQIAFEVTERGLVDVVVARENLQALRDVGHQVLIDDFGTGYCSLAYLQTLPVDCLKI
DKAFIDALGHDAASSGVAPHIIHMAQSLHLKVIAEGIEHEAQAAFLCSEGVKFGQGWLFA
RALSAVQFTELITRGRRRAGRRLDDEA