Protein Info for PfGW456L13_5019 in Pseudomonas fluorescens GW456-L13

Annotation: Metal transporter, ZIP family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 transmembrane" amino acids 16 to 38 (23 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 79 to 100 (22 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 152 to 168 (17 residues), see Phobius details amino acids 188 to 210 (23 residues), see Phobius details amino acids 217 to 239 (23 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details PF02535: Zip" amino acids 154 to 292 (139 residues), 68.5 bits, see alignment E=3.2e-23

Best Hits

KEGG orthology group: K07238, zinc transporter, ZIP family (inferred from 91% identity to pfs:PFLU0877)

Predicted SEED Role

"Metal transporter, ZIP family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QX20 at UniProt or InterPro

Protein Sequence (297 amino acids)

>PfGW456L13_5019 Metal transporter, ZIP family (Pseudomonas fluorescens GW456-L13)
MGTETLAIGNGRMFRYAFGSLLLLAGMSLLVAHGLAWLDLEPKLLRALQGGAICALGTAL
GAVPVLVIRRMPQRLSDTLLGFGAGVMLAATAFSLIVPGISAAEGLGLSPWASSGLISFG
IMLGAFLLFLVDRKVSGASPDMLVGTLERPVIAPRIWLFVFAIIAHNIPEGMAVGVSAGG
AMPDADSLAMGIALQDVPEGLVIALVLAGAGMSRGKAFLIGAASGLVEPVFALLCAWLVS
LAELLLPLGLALAAGAMLLVVTHEVIPESRRNGHDKLASLGLLMGFCLMMVMDTALA