Protein Info for PfGW456L13_3176 in Pseudomonas fluorescens GW456-L13

Annotation: Glycoprotein gp2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 993 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF07731: Cu-oxidase_2" amino acids 806 to 897 (92 residues), 36.3 bits, see alignment E=2.4e-13

Best Hits

KEGG orthology group: None (inferred from 74% identity to ppg:PputGB1_2665)

MetaCyc: 74% identical to McoA manganese-oxidizing multicopper oxidase (Pseudomonas putida GB-1)
RXN-11646 [EC: 1.16.3.3]; 1.11.1.M1,1.16.3.3 [EC: 1.16.3.3, 1.11.1.M1]

Predicted SEED Role

"Glycoprotein gp2"

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.11.1.M1 or 1.16.3.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (993 amino acids)

>PfGW456L13_3176 Glycoprotein gp2 (Pseudomonas fluorescens GW456-L13)
VFAMKLDTGRLNPSLLSKTRLALSISAAAIMLGLGLSQTQAVPLDNTDPPPPTDPSAFTN
PPADPNAALRDLLKQPPANVGAFDLPNGVAGNRQTPLVDNVLPPDLQPSFNIPTNGNASP
VFGVQPFTQKLELFEEFGSNKLDAADPPSPVPFPVPTLGPAPAQDPLKVARSGPSPAALD
AFLRQPALTPFPTEFSNVLDRNPWKAQIEDFLNRRVDSPAEGRPPGKGWSHQRFNEFFPR
NAFKTVQAGAHVNSGLRDRMQRHNYAVGEFAPGGLYHNTSGNPANEGTTKGIQVQFHDNF
PVQDHNALWTFDGTFPPKLLQVRYGQAMLMRHYDALPIDPSANRGFGLHTITTHEHNGHS
PAESDGFANAFFFPGQYYDYRWPIQLAGYDSINTSAQDPRAAFPCDPGEKLFVNDANPGF
KTCDRGTIKIRGDWRETMSTHWFHDHMLDFTAQNVYKGNATMMNYYSAVDRGNESVDDGV
NLRLPSGSGLGWGNRDYDVNLTIADKAWDKAGQLWFNPFNTDGFLGDQVLTNWEYKPFLD
VRARRYRLRILNGSVSRYFKLALVRQVNGNGGEFPGPKSSGVSYNRVPFHMIANDGNIME
HAVPFDGSLDLDGDGDTQDHNAILPIQGIAERYDIVVDFAKNGIKPGDRIFFVNIEEHEN
GKRPERDIPLADVLSGKYLPVVRQTSHGPQWVNGDPGVGVFMQLNVQPYTGQDVSMNPVD
FEPAKPGKPEGKFMIPLPLHRDDPADIARLAQARHRTFIFGRSNGTDFKPWTIKTDGGEG
FNMDPRRISAAPQLATGPTPAGFKGEGTLEIWKIENGGNGWSHPVHVHFEEGIILTRGGK
TPPEWEKGARKDIYNIGRHPESLDNVEMAIRIREFAGTYMEHCHNTQHEDTSMLLRWDSE
HPGQFQLMPTPLPSWDGVRFVASVALPTFRTGDGVGPQVEVDNNQEDGSGSGSSGSGSGS
SGSSSGSGSSGSGVSGSSSGSGSSGSGVSGGKG