Protein Info for PfGW456L13_3022 in Pseudomonas fluorescens GW456-L13

Annotation: transporter, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 395 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 111 to 139 (29 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 218 to 245 (28 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 277 to 299 (23 residues), see Phobius details amino acids 305 to 326 (22 residues), see Phobius details amino acids 341 to 362 (22 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 280 (259 residues), 69.6 bits, see alignment E=1.2e-23

Best Hits

Swiss-Prot: 56% identical to Y3302_PSEA7: Uncharacterized MFS-type transporter PSPA7_3302 (PSPA7_3302) from Pseudomonas aeruginosa (strain PA7)

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_2608)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRM8 at UniProt or InterPro

Protein Sequence (395 amino acids)

>PfGW456L13_3022 transporter, putative (Pseudomonas fluorescens GW456-L13)
MSVQQVAPQSSLAITLQIVSIVFYTFIAFLCIGLPIAVLPGYVHEQLGFSAIVAGLTIGS
QYLATLLSRPMAGRMSDSVGTKRAIIYGLAGIVLSGVLTLLSTLLQGFPLLSLLILIAGR
LLLGIAQGLIGVGTISWCMGQVGAEHTARSISWNGIASYGAIAIGAPLGVVMVQQLGFAS
LGIALSLLALAALLLIRNKPSVPVVRGERLPFWAVFGRIAPFGASLSLASIGYGTLTTFI
TLYYVNRGWTGAAYCLTVFGVCFILSRLLFISAIGRFGGFTSAIACMCIETVGLMLLWLA
PSTGYALIGAGLTGFGLSLVYPALGVEAIKQVPNSSRGAGLSAYAVFFDLALAIAGPLMG
AVALNLGYAWIFFSAALLSVTGLGLTLLLKSRSMT