Protein Info for PfGW456L13_3006 in Pseudomonas fluorescens GW456-L13

Annotation: Sigma-54 dependent transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 PF20161: VpsR" amino acids 22 to 68 (47 residues), 27.5 bits, see alignment 4.7e-10 PF14532: Sigma54_activ_2" amino acids 92 to 259 (168 residues), 78.9 bits, see alignment E=9.1e-26 PF00158: Sigma54_activat" amino acids 92 to 257 (166 residues), 246.8 bits, see alignment E=1.9e-77 PF07728: AAA_5" amino acids 114 to 233 (120 residues), 30.6 bits, see alignment E=6.1e-11

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_2592)

Predicted SEED Role

"Sigma-54 dependent transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QRE1 at UniProt or InterPro

Protein Sequence (394 amino acids)

>PfGW456L13_3006 Sigma-54 dependent transcriptional regulator (Pseudomonas fluorescens GW456-L13)
VGLLRLQPYHLEHPEAVKELISRSGTEWIAVLNQEVLRLQNVGDFVCEWFFDFHTLPFDV
SRVQVTLGRAFGMARLRGQGTVYVDQPEHELLGDSKPIRELRKLLSKLAPTESPVLIRGE
SGTGKELVARTLHRQSQRHNKPFIAINCGAIPEHLIQSELFGHEKGAFTGAHQRKVGRIE
AANGGTLFLDEIGDLPLELQANLLRFLQEKHIERVGGSQLIPVDVRVLAATHTDLEAAIE
KKRFREDLYYRLNVLQVATVPLRERHGDLAVLANHFSHFYSHETGRRPRSFSEDALIAMG
KHDWPGNVRELANRVRRGLVLAEGRQIEARDLGLISQHTLAAPMGTLEEYKSRAERQALC
DVLSRHSDNLSVAAKVLGVSRPTFYRLLHKHQIR