Protein Info for PfGW456L13_2775 in Pseudomonas fluorescens GW456-L13

Annotation: Prophage Clp protease-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 transmembrane" amino acids 63 to 77 (15 residues), see Phobius details PF01972: SDH_sah" amino acids 27 to 138 (112 residues), 34.7 bits, see alignment E=1.6e-12 PF00574: CLP_protease" amino acids 27 to 162 (136 residues), 117 bits, see alignment E=1.5e-37

Best Hits

KEGG orthology group: None (inferred from 66% identity to pag:PLES_13531)

Predicted SEED Role

"Prophage Clp protease-like protein" in subsystem cAMP signaling in bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QQZ3 at UniProt or InterPro

Protein Sequence (660 amino acids)

>PfGW456L13_2775 Prophage Clp protease-like protein (Pseudomonas fluorescens GW456-L13)
LVEVMLYDEIGAWGITAKQFARDLAAIGDVSQINLHIHSPGGDVFEGTTMYNLLRGHSAR
VVVYIDGLAASMASVIAMAGDEINMPANAMMMIHKPWGGQVGDADAMREYADLLDKVEST
LIQAYTRKSGKAIEDIQALLKAETWMDGNEAVAAGFADKVLEPFKAAAQLTSKRMQEFTN
MPTSAQNLFNPRASAPTPAPSPAPAPTPAPLVDPAPVALTLDQMRAQVMAADGARRTAIN
AAFCGSLVTSHTELLNTCLNDLSCTAEMAREKLLVALGSTTTPTGGPHHHGHISNGNLVG
DSVRASLAGRLGQAENQKDNAYNHMSLRELARASLHDRGILVATLDPMAMVGLAFTHDSS
DFGNILVDSAAKSVLLGWDEAPETYHLWTKKGRLSDFKVASRVGMGAFPSLREVRPGAEY
KYITTNDRGEKIRLATYGEMFSITRQAIINDDLDQLSTVPYNMGLAARGTIGDLVYDTLI
HSPVMSDGKALFDAERNNLFSGTGANMSIEALSKAKTAMALQKTEVEGGKARTLNIRPAF
VLVPVALEDKTNQLIRSASVPGVDTNAGIDNPIRNFATVIAEPRLDDDSPVTWYEAARQG
ADTIEVAYLDGVEQPYMEQQQGFTIDGVTSKVRIDAGVAALDYRGLNKSVGVVPLAKASR