Protein Info for PfGW456L13_2453 in Pseudomonas fluorescens GW456-L13

Annotation: Major facilitator superfamily transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 25 to 50 (26 residues), see Phobius details amino acids 63 to 84 (22 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 120 to 120 (1 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 162 to 188 (27 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 319 to 338 (20 residues), see Phobius details amino acids 460 to 484 (25 residues), see Phobius details amino acids 504 to 523 (20 residues), see Phobius details amino acids 529 to 547 (19 residues), see Phobius details PF00083: Sugar_tr" amino acids 26 to 237 (212 residues), 107.7 bits, see alignment E=7.3e-35 amino acids 459 to 555 (97 residues), 26.3 bits, see alignment E=3.6e-10 PF07690: MFS_1" amino acids 30 to 340 (311 residues), 86 bits, see alignment E=2.4e-28

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_2379)

Predicted SEED Role

"Major facilitator superfamily transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QMC8 at UniProt or InterPro

Protein Sequence (558 amino acids)

>PfGW456L13_2453 Major facilitator superfamily transporter (Pseudomonas fluorescens GW456-L13)
MAAIDNATTGSTPNRGLTREERKVIFASSLGTVFEWYDFYLYGSLAAIIAKHFFAGVNET
TSFIFALLAFAAGFAVRPFGAIVFGRLGDMIGRKHTFLITIVIMGISTAVVGLLPGYATI
GVAAPIILISLRLLQGLALGGEYGGAATYVAEHAPKGKRGYFTSWIQTTATLGLFLSLLV
ILACRTALGTEAFEAWGWRIPFLLSILLLIISVYIRLQLNESPVFVKMKAEGKSSKAPLT
ESFARWENLKIVIMALLGGTAGQAVVWYTGQFYALFFLLQTLKIEPQTANLLIAGSLLIG
TPFFVIFGSLSDRIGRKGIIMAGCIIAALTYFPIFHALTQYGNPDVFIAQEKNPVTVVAN
PAQCSFQFDPVGKAKFTSSCDLAKTVLAKRAIPYKNADAEPGAVAQVRIGDKVIESFEGT
GMPAADFKAKNDAFATTLATALKDAGYPEKADPAKTNYPMVLLLLTILVIYVTMVYGPIA
AWLVELFPARIRYTSMSLPYHIGNGWFGGFLPTVAFAMVAATGDIYYGLWYPIVIAVMTA
VLGIFFMPETKDREIHHT