Protein Info for PfGW456L13_2310 in Pseudomonas fluorescens GW456-L13

Annotation: FIG137594: Putative iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 197 to 220 (24 residues), see Phobius details amino acids 339 to 363 (25 residues), see Phobius details PF03929: PepSY_TM" amino acids 12 to 366 (355 residues), 212.7 bits, see alignment E=1.1e-66 PF03413: PepSY" amino acids 61 to 118 (58 residues), 32.9 bits, see alignment E=6.5e-12

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfo:Pfl01_3923)

Predicted SEED Role

"FIG137594: Putative iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293PZI2 at UniProt or InterPro

Protein Sequence (400 amino acids)

>PfGW456L13_2310 FIG137594: Putative iron-regulated membrane protein (Pseudomonas fluorescens GW456-L13)
MSKKSRSKIWFLVHSWLALPIWFFVLIVCVTGTLAVISQEIVWLANPPMRASQPSDDAPL
LSYQQVIEAINKAEPQTVVQSISRPDESHFALDVEVSYPDGRSVVIYVNPYSGVIQGVAP
EFNFRAFTRALHGWWLVPFTNGYSWGWYLVSFLGLPLLASLVTGLVVYKRFWKGFFRPTL
RIRHGARIFWGDFHRLSGIWSIWFIAVISITGTWFLIQALLFDNQISISTEKIIPAMSRE
AVPLSADGSPPPRIDLDRAIEIATQKISGLEASFVSLPGNAYSHLDVGGRGWYPLMFQTA
TINPYNGEIAASRLISDRSTLEFVTESMRPLHTGDFGGLWIKLIWAFFGLLLSMMVLSGL
LIWTKRTALATANAFKRSNKKQRGTAAQPVTNNEPSEAHL