Protein Info for PfGW456L13_1469 in Pseudomonas fluorescens GW456-L13

Annotation: LSU ribosomal protein L21p

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 104 PF00829: Ribosomal_L21p" amino acids 3 to 102 (100 residues), 128.6 bits, see alignment E=4.5e-42 TIGR00061: ribosomal protein bL21" amino acids 3 to 103 (101 residues), 140.1 bits, see alignment E=1.4e-45

Best Hits

Swiss-Prot: 98% identical to RL21_PSESM: 50S ribosomal protein L21 (rplU) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)

KEGG orthology group: K02888, large subunit ribosomal protein L21 (inferred from 99% identity to pba:PSEBR_a4865)

MetaCyc: 56% identical to 50S ribosomal subunit protein L21 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L21p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0F4TIQ2 at UniProt or InterPro

Protein Sequence (104 amino acids)

>PfGW456L13_1469 LSU ribosomal protein L21p (Pseudomonas fluorescens GW456-L13)
MSYAVIVTGGKQYKVAPGEYLKIEKLEVATGESVTFDRVLLVANGDDVNIGAPVVAGATV
VAEVISQGRHDKVRIIKFRRRKHHMKRMGHRQWYTEIKITGIQA