Protein Info for PfGW456L13_1445 in Pseudomonas fluorescens GW456-L13

Annotation: COG2879, Hypothetical small protein yjiX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 65 PF04328: Sel_put" amino acids 5 to 65 (61 residues), 102 bits, see alignment E=7.2e-34

Best Hits

Swiss-Prot: 72% identical to YBDD_SHIFL: Uncharacterized protein YbdD (ybdD) from Shigella flexneri

KEGG orthology group: None (inferred from 91% identity to pst:PSPTO_4637)

Predicted SEED Role

"COG2879, Hypothetical small protein yjiX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0F4TLK3 at UniProt or InterPro

Protein Sequence (65 amino acids)

>PfGW456L13_1445 COG2879, Hypothetical small protein yjiX (Pseudomonas fluorescens GW456-L13)
MFNDLSRLGKYLGQAARLMVGMPDYDNYVEHMQTKHPDKPVMSYEMFFRERQEARYGGKG
GPKCC