Protein Info for PfGW456L13_1164 in Pseudomonas fluorescens GW456-L13

Annotation: Coenzyme PQQ synthesis protein F (EC 3.4.99.-)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 608 PF20434: BD-FAE" amino acids 375 to 564 (190 residues), 32.6 bits, see alignment E=1.2e-11 PF00326: Peptidase_S9" amino acids 399 to 605 (207 residues), 164.2 bits, see alignment E=6.2e-52 PF01738: DLH" amino acids 441 to 589 (149 residues), 23.8 bits, see alignment E=5.9e-09

Best Hits

KEGG orthology group: None (inferred from 78% identity to pba:PSEBR_a5170)

Predicted SEED Role

"Coenzyme PQQ synthesis protein F (EC 3.4.99.-)" in subsystem Coenzyme PQQ synthesis or Pyrroloquinoline Quinone biosynthesis (EC 3.4.99.-)

Isozymes

Compare fitness of predicted isozymes for: 3.4.99.-

Use Curated BLAST to search for 3.4.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A293QL09 at UniProt or InterPro

Protein Sequence (608 amino acids)

>PfGW456L13_1164 Coenzyme PQQ synthesis protein F (EC 3.4.99.-) (Pseudomonas fluorescens GW456-L13)
MNETHASSPKAEPFSAAKAVAAGIDFAELQVGRQGLFWNEYRPEDAACRIWHWRDGAAKC
LTPPGFSVRSRVYEYGGGAFCLADDGIVFVNEADQQLYRQSLQDEAPERLTSGACRYGDL
QFANGQVLAVEEHRDQHRLVAIDLLDGARHLLAEGADFYAAPTLSPDARRLAWIEWSRPD
QPWTATRLMVAERLANGGFAEPRCVAGEGTQESVQQPRFDAGGRLYCLTDRAGYWQPWKE
SEKGLNPLPSASADHGPAPWQLGGSTWLPLSDNSYLASWTEGGFGRLGIGGDASADFTGD
YSRFRHLAVDEQFIYCIAASPVSSTAVIAIDRQSRQVQVLAGGIAPLAPEQISRPQTLRY
PSGSGEAHGFFYPAMTGEAKPPLVVFVHGGPTSACYPMLDPRIQYWAQRGFAVADLNYRG
SSGYGRAYRQALHLGWGDVDVQDACAVVSYLKQRGLIDGDQAFIRGGSAGGYTSLCALAF
HNVFRAGASLYGVSDPVALGRATHKFESDYLDWLIGDPQLDAERYAARTPLLHAGNIRVP
MIFFQGELDAVVVPQQTRDMVTALQDKGILVEAHYYADERHGFRKAGNQAHALEQEWLFY
RRVMDSVD