Protein Info for PP_5607 in Pseudomonas putida KT2440

Annotation: conserved membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 216 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 186 to 203 (18 residues), see Phobius details PF06197: DUF998" amino acids 16 to 200 (185 residues), 106 bits, see alignment E=1e-34

Best Hits

KEGG orthology group: None (inferred from 95% identity to ppf:Pput_3103)

Predicted SEED Role

"FIG00964277: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A140FWF9 at UniProt or InterPro

Protein Sequence (216 amino acids)

>PP_5607 conserved membrane protein of unknown function (Pseudomonas putida KT2440)
MKTLDRLLLGSGLLIPLWLLAGVWLTAQAYPGYDHLQQAMSQLGAAGSPTHSWSPRVNNS
PLALLFALFAWGLMRRWHSSKLALLSAGLVLLHGMGSLGTGWFPCDQGCAPVQPSTSQQL
HNLFGLLMFLSLTLASALWAWLGNRIAGSPALALFSLACVVLAIITVALMGQAAQSGQLF
GLYQRLNYGVSVLWVASLAWTSLRKPKASPLRMAVP