Protein Info for PP_5404 in Pseudomonas putida KT2440

Annotation: Transposition protein, TnsC-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 transmembrane" amino acids 209 to 228 (20 residues), see Phobius details PF13401: AAA_22" amino acids 95 to 226 (132 residues), 29 bits, see alignment E=6e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_5404)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88BY3 at UniProt or InterPro

Protein Sequence (448 amino acids)

>PP_5404 Transposition protein, TnsC-related protein (Pseudomonas putida KT2440)
MNRIIEARFDGYMDIESIRSRVTVRPDPIKDLEALPPLLGAELFAERLKEMYLPNQFSLT
FIQEMIGLAYLHNLKNFRSEAEYAGRIFNPPDVEASPICLTGLAGVGKSQTIAALRRAMP
PPVELTCDLFEGSIELVSMWYASARGKASGKQLLLDFVHGSGHEGRGGNLAKLLVECRRR
ANRDGVLTVVLDETQHINTGMGASKVTDILLTMVAIGVPTIFVSNYSLGHKLFRRNSEDK
QRLLSQPRIMLPEDPRSQDWAEYVGECMRLSGGRISSGKDEFAAELYRSTFGIKRLVVQL
LKLAYIECRVAGRNRIEVGDLHKAYRSSAYTTSSKEVEELQLLAISKGNQGGHLDLRCPF
DLPVEYKSNVVSFNRTDRDQRVQTKVFDSSATETERSLLRQITQPDEKALAKAPRRKPLP
KATDEDLALAFHRYADSQSPSLPPKKPK