Protein Info for PP_5242 in Pseudomonas putida KT2440

Annotation: Sensor histidine kinase/GAF domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1682 transmembrane" amino acids 1071 to 1087 (17 residues), see Phobius details amino acids 1377 to 1395 (19 residues), see Phobius details PF00069: Pkinase" amino acids 101 to 264 (164 residues), 41.8 bits, see alignment E=2.2e-14 PF13191: AAA_16" amino acids 301 to 487 (187 residues), 118.2 bits, see alignment E=1.5e-37 PF01590: GAF" amino acids 1281 to 1423 (143 residues), 52.5 bits, see alignment E=1.9e-17 PF13185: GAF_2" amino acids 1282 to 1423 (142 residues), 43.9 bits, see alignment E=7.2e-15 PF02518: HATPase_c" amino acids 1573 to 1680 (108 residues), 80.6 bits, see alignment 2.9e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppu:PP_5242)

Predicted SEED Role

"Sensor histidine kinase/GAF domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CD9 at UniProt or InterPro

Protein Sequence (1682 amino acids)

>PP_5242 Sensor histidine kinase/GAF domain protein (Pseudomonas putida KT2440)
MLDERLAHRPIDYDQSIDEGWLKRCEVSALGQEGELSYFRLRDPATNQAWIAVRAPLEAP
SACQRLERDYRLQLDPQWAVIPSAFVRSAEGPLLVYPAGRSVADLIAEGPAALEPFLDIA
VNAAHALAQAHERNVLHGTLQPEHVYLRAHQRVRLGFFRADPAERISEQGTPLGNWAYLA
PEQVCPHGSSSDRRSDIYALGAILYQLLVGELPLAGRDTLHWRQLHAGVQPRAASEADSK
VPHSLSLVLAKALAKEPDARYQSARAFAVDLAHCQRQWAAHKTMAPFTPGCADPVAPGHA
RLFGRGAEQKAITLLLKALNRDSKPQALVINGAAGMGKSSLVEAALKANAEGYWAVGKCN
SHTQAVPYTPWIEILSALTTQLLAKNSQDLVTLRREIQRRIKSHGRLLGKLAPDLQLILG
PLPQLPAKPTRLALQKELHAIIEFLQVFSRPGQPLVLFFDDLQWADDATRQLLAQLLAEA
PANLLLIFTRCNDTPTTSAPLAIPAAVRSTTLNLRPLAVGAVAELIGERFHVAPEAAFQL
AERVHGKTAGNPFFINQILRAMVEDQLFIFDTQAMRWSWCLQAVARHCYSDNVADLMVHR
LERLPAPQRDLLRVVSAAGSHCDEHLLRQVLAQPPGEPLKALIGAGFLQPGQNGLGFTHD
RVMEAAYALTPVHQRASLHARIALAMRQAWPGRTHEVLFELASQLQRASPCGFAADDCEA
FLQLLREAASCARDAGTFEQAAGYLHTAEQLLQHSATLESRATHGFAIACMATECDMQLS
RTIAAEARLTECRQRARSVLDQARACRLQALLYTLRGDYQAAIDSALAGLDLLGISPVRG
LDWQQVEASHAHVQALIEQKDRHCLESLPRTDSEEVTVAISLLATLSSSFFVKDDISFLH
LAKLMELSLLHGVAPGSTYGMAWYGVMIAERFGAYHDGHACCLAALKLIERHGFDADLTS
ALLALDQVSAWTSPMEFARRTALDAVDSARLSGDLAMSCYACNHLVSDSLFMGRYLPDVV
EEVAQGLATVRRHGYGDIEQILLAQQAFVANLSGTPCPAPATASKSPTTRFFQHLFAAMC
AFYMGNIPKTMRDLALAGDNTWAAPAHINLADYHLFRGLALGSPEAHGSLADKLRELQAL
RERFSRWAGFNPATFRSKQLLIEGVIAKLEGDGLAAIRCFDQAQIAATAAGFIHEQALAH
EQLAEVCIPSGLISGANLHLRIARDCFHIWGATGKVHQLETLHPFLRTQPIQETYRATHQ
ARLDLEAGIEAARALSEEVLLEGLIETLMGHLTQHSGADHGALLIVSGAEFQMAALAYID
DAGLHVSMDNCQKFMTQAPLSVINTTMRTRKPLVLNDALSECPEAFRQQLQARNARSVLC
LPLVIQGVLIGLVYLENRLVPNLFGSQRLAMLEILASQAAVSLQTAKFYTRLAEENQIRT
QMEAELRRSRAELARSAHLQAMNELSASIAHEISQPLLGIASNAAASLRWLKRAKPDLEE
AIAGLEDIRNDSERAGNIVRALRSLAKQSPMQLKAVKLDELIREVVRLTSADAAKGKVDV
QTRLKAGVCVTADPVQLQQLVFNLITNALEALAGYRCDGVLKITSAVVEDEVEICVDDNG
PGIAADERERVFDAFHTTKTGGMGMGLAICSSVAQAHGGQLQALVSQLGGCRIRVSLPLN
HA