Protein Info for PP_5195 in Pseudomonas putida KT2440

Annotation: putative Iron ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 540 transmembrane" amino acids 9 to 31 (23 residues), see Phobius details amino acids 54 to 75 (22 residues), see Phobius details amino acids 87 to 112 (26 residues), see Phobius details amino acids 134 to 154 (21 residues), see Phobius details amino acids 191 to 214 (24 residues), see Phobius details amino acids 227 to 251 (25 residues), see Phobius details amino acids 281 to 306 (26 residues), see Phobius details amino acids 322 to 345 (24 residues), see Phobius details amino acids 359 to 384 (26 residues), see Phobius details amino acids 404 to 425 (22 residues), see Phobius details amino acids 452 to 474 (23 residues), see Phobius details amino acids 510 to 529 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 68 to 250 (183 residues), 47 bits, see alignment E=1.3e-16 amino acids 360 to 525 (166 residues), 27.4 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to ppu:PP_5195)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CI6 at UniProt or InterPro

Protein Sequence (540 amino acids)

>PP_5195 putative Iron ABC transporter, permease protein (Pseudomonas putida KT2440)
MPHTPQRRWYLPVSLIAALVLLPLSVLLLSWQSIDLQIWSHLLDTQMGRLLGNTLTLVVG
VGIGVTVLGVSLAWLTSLCDFPGRRWLDWALMLPFAIPAYVLAFVFVGLLDFAGPVQSAL
REVFGPMRLPRVRSTGGVITVLVLVFYPYVYLLARTAFLAQGKGLMEAARVLGLSPLQAF
WRVALPMARPAIGAGIALALMETLADFGAVAVFNFDTFTTAIYKTWYGFFSLSSAAQLAS
LLLLAVMLVLYGERRARGASRSGNERPRAQALYHLRGLKALLASGWCLLVFACAFVIPLL
QLLAWFWQRGRHDLDERYIGLVLHTLYLGSMAALVTVCVALLLAFARRQAPTGGIRAGVG
LANLGYALPGSVLAVSIMLAFSYLDNHLVIPLSSWLGGAGKPLLLGSLSALLLAYLVRFI
AVAYGPLESSLERIRPSLPEASRSLGVGGARLFFKVYLPLLVPGALGAALLVFVDVLKEM
PATLLMRPFGWDTLAVRVFEMTSEGEWARASLPALTLVLVGLLPVIGLIRRSARRPGHSH