Protein Info for PP_5126 in Pseudomonas putida KT2440

Annotation: conserved protein of unknown function containing an HDOD domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF08668: HDOD" amino acids 19 to 213 (195 residues), 179.2 bits, see alignment E=3.4e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to ppf:Pput_5000)

Predicted SEED Role

"Predicted signal transduction protein" in subsystem Flagellar motility

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q88CQ4 at UniProt or InterPro

Protein Sequence (290 amino acids)

>PP_5126 conserved protein of unknown function containing an HDOD domain (Pseudomonas putida KT2440)
MSQELSAEQIQQALQGITIPPQPQIMVDLQFEQYMPDPDLETIAKLISQDPGLSGALLKL
VNSPHFGLSNKIGSIQRAVNLLGSRSIINLINAQSIKGEMSDETIVTLNRFWDTAQDVAM
TCLTLAKRTGIQAADEAYTLGLFHDCGVPLMLKRFPDYMDVLEEAYAKADEETRVVDTEN
RTFNTNHSVVGYFTAKSWRLPEHLSAAIANHHNALAVFRDDTSRNTQSQLKNLLAVLKMA
EHICASYRVLGNQAVDHEWNVVGPLVLDYIGLSEYDFENLKQNIRELGGH